Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05019 ATGGCAAAGGACGTTGAAGTTACTGAACGTGGCTCTTTCTCTAACAAAGACTACCATGACCCTCCACCAGCACCACTCTTTGATGCTGAAGAACTCACAAAATGGTCCTTTTACAGAGCACTTATTGCTGAGTTCATTGCAACTTTACTTTTCCTTTATGTTACTGTTTTAACTGTTATTGGTTACAGTATTCAAACTGATGTTAAAGCTGGTGGTGATGTTTGTGGTGGTGTTGGTATTCTTGGTATTGCTTGGGCATTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTATTTTTGGCTCGTAAGGTGTCTTTGATCAGAGCAATTATGTACATGGTAGCTCAATGTTTAGGGGCTATTGCTGGTGTTGGGTTGGTTAAGGCTTTTCAAAAGTCTTACTTTGTTAGATATGGTGGTGGTGCTAATTTTCTTCATGACGGTTACAGTACTGGTGTTGGATTAGGTGCTGAGATTATTGGTACCTTTGTTTTGGTATACACTGTTTTCTCTGCTACTGATCCTAAAAGAAGTGCTAGAGATTCCCATGTTCCGGTTTTGGCACCACTTCCTATTGGATTTGCTGTATTCATGGTTCATTTGGCAACCATCCCTGTTACTGGAACTGGCATTAATCCTGCTAGAAGTCTTGGTTCTGCTGTTATCTACAACAAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTTATTGGGGCAGCCATTGCTGCATTCTACCATCAATTCATCTTAAGAGCAGGTGCAATTAAAGCTCTAGGATCATTCAGAAGTAACCCTACTGTTTAA 864 0.4155 MAKDVEVTERGSFSNKDYHDPPPAPLFDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYSIQTDVKAGGDVCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAIAGVGLVKAFQKSYFVRYGGGANFLHDGYSTGVGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAIKALGSFRSNPTV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05019 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Trre1g05019 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Trre1g05019 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Trre1g05019 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05019 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Trre1g05019 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05019 Trre-Chr1 56411542 56414711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05019 1 287 Major Intrinsic Protein MIP AT2G37170 83.624 2.56e-178 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05019 K09872 - gmx:100817292 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04268 13 50221559 50223016 Trre1g05019 1 56411542 56414711 ECH
Trre1g05019 1 56411542 56414711 Trre1g05019 1 56411542 56414711 ECH