Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05013 ATGTTTGTAGTCATGGATTCCATGGAAAAAACCTCAGAAAAATGCTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTAAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATGGCAAAGTAGATTTCAACAAAACTCGTGTTCCACCACTCATTCCTTGTAGAATCTCTGCTATGAAATACATGGCTGATCCTGAAACTGATGAAGTTTATGTCAAAATGAGATTAACACCTTTAAGAGAAAAAGAATTAGATTTAGAAGAAGATTGTTTCTTTGGAAACAATGGTTTAGAGGGTCAAGAAAAACCAACTTCTTTTGCTAAAACATTGACACAATCTGATGCAAACAATGGTGGTGGTTTCTCTGTTCCTAGATACTGTGCTGAGACTATTTTTCCTAGATTGGATTATTCTGCAGAACCACCTGTTCAAACAATTATTGCTAAAGATATGCATGGACAGTGTTGGAAATTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGCAATTTTGTGAATCATAAGAAACTTGTTGCTGGTGATTCAATTGTTTTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGAAGAGCTAAGAAAGGTGGAATTGGTGGTGGAATAATTGATCAGTTTTCTAATTCTTCTGCTAATTGGAACCGCGTTTCGCCGATGTTTGGTAGCGGCGGTGTTGGTGGTGGTGGTTCTGGTTTTTTGTGTGGAAATGAAAACAGAAAAAGTTGTGTTGGTGGTGGTGATGATGATTTGATGAGAAGAGTTGGTTCTGAATCTGTTGTTGAAGCTGTGAATTGTGCTGTGAATGGAAGATCTTTTGAAGTTGTATATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAAGTTTCATCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTTAAAATGCCATTTGAAACTGAAGATTCTTCTAGGATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTACAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAATTTCAATCTTTCACCATTCACACCTCCAAGAAAAAAACCAAGGTTTATTCAAGATCCATATTTTCATCTCATAAATCAACTTCCAATGCCAACATCAACATCAACATTCTCCAACATTAATCATGTGAATTATACAAACTCTTCTTCTCTCTGTAACATTCAAGAAAATAGTACTAATTATAGTTCATCATCAAGCTGCATACAGGGAGCCAGGCATGGTCAATTTGGATCAAATAATGATTTAATTCCTTTCAATAAGTTACAACAAGACATGTTTCTTGGTAATTTGTCATTGTCAAGATTTGATCAAAAACAACCTATTAGGCCACCACCTTGTGGACCTTACAAGAGTCATAGTAATAATAAGAACAATGTTGACTTGTCTTGTTTGTTGAGTGTAGGAAATTCTGGTCAAAGTTTTAAGGAATTATCCAATATTGAAGCAAAATCACCCCATAAACATCACATTTTGTTATTTGGAAAACTCATTCACACTGATCAACAACAGAACAGTTCTTTATCTGAAGAAGGAACTTCTTTGAAAACATCAAATGTTTCTTCTTCTTCTGAGAATCCAGTTGAGAATTCTTCTGATGGTGGTTCACCTTGGTATAAGGATCAACAACATGTTGGAACAGAAAATGTTACAACATTGTGTATGGCTTCATGA 1866 0.3585 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFNKTRVPPLIPCRISAMKYMADPETDEVYVKMRLTPLREKELDLEEDCFFGNNGLEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGIIDQFSNSSANWNRVSPMFGSGGVGGGGSGFLCGNENRKSCVGGGDDDLMRRVGSESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTSTSTFSNINHVNYTNSSSLCNIQENSTNYSSSSSCIQGARHGQFGSNNDLIPFNKLQQDMFLGNLSLSRFDQKQPIRPPPCGPYKSHSNNKNNVDLSCLLSVGNSGQSFKELSNIEAKSPHKHHILLFGKLIHTDQQQNSSLSEEGTSLKTSNVSSSSENPVENSSDGGSPWYKDQQHVGTENVTTLCMAS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05013 621 CDD B3_DNA 117 218 IPR003340 GO:0003677
Trre1g05013 621 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre1g05013 621 FunFam Auxin response factor 326 399 - -
Trre1g05013 621 SUPERFAMILY DNA-binding pseudobarrel domain 114 220 IPR015300 -
Trre1g05013 621 SMART B3_2 118 220 IPR003340 GO:0003677
Trre1g05013 621 FunFam Auxin response factor 116 220 - -
Trre1g05013 621 Gene3D - 116 220 IPR015300 -
Trre1g05013 621 MobiDBLite consensus disorder prediction 567 608 - -
Trre1g05013 621 Gene3D - 325 399 - -
Trre1g05013 621 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Trre1g05013 621 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Trre1g05013 621 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 591 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05013 Trre-Chr1 56346696 56349339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05013 1 604 B3 DNA Binding Superfamily AT4G30080 53.160 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre1g05013 B3 5.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05013 - - tpra:123919517 1107.05