Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05012 ATGGTTGGACCAAACTTCATGGACGAATTAGACTGTGGCAGTTTCTTTGATCACATCGACGACCTCCTTGATTTCCCTGTCGACGATGTTGATACCGCTGCCGCTTCCTTGCCATCCGTCGCCTCCGTCGGAAACTGCAACTCGTTGGCAAGTATCTGGCCTAATGAGTCCGAGTCATTTCCGACTTCGGACTCGGTGTTTTCAGCCGGCAACAGTGCTTCTGACCTCTCCGCGGAACTCTCCGTTCCGTATGAAGATATTGTGCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCATTTAGTGAGGGGAGTCTCACAATGAAGAAAGTGGAGCAGCAGCCATCATCATGTGTCCCCAAGGAGGACTCTGTGCATAGTCAATTCCAGACATCAAGTCCAGTTTCTGTGCTCGAAAGCAGCAGTTCCTGCTCCGGTGGAAAGACCGCTACAGGGATTTACATCCCTGTGCCTTGTGGACGTGCACGCACCAAACGTCCACGTCCTGCAACTTTCAACCCTCGTTCCGCCATGCAGCTCATTTCCCCTACTTCTTCTGCGGGGGAGAATGTGCAGCCAAATGTTATCTCCACCAAGGCAGCATCTTCCGATTTTGACAATTTTGCTGAGTCTCGAATTCTTGCCAAGAAACCAAAGCTAGCTTCTGGAGAGACCAAGAAGAAAAAGAAAATCAAGATGACACTTCCTGCTGCTGCTCAATCTGACAGCGGCGATCAGAATGGTTCACTCCCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAATGGAGGGCAGGACCAATGGGTCCAAAAACACTCTGCAATGCTTGCGGTGTTCGCTACAAGTCAGGCCGTCTTTTCCCTGAATACAGGCCTGCTGCTAGTCCAACTTTTTGTCCAGCTTTGCACTCCAATTCCCACAAGAAGGTCCTTGAAATGAGATGCAAGGATATCGAGAATCCCGGTTTTGAATCACATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCATTCTCGCCCTCGAGTACATTTGA 1050 0.4933 MVGPNFMDELDCGSFFDHIDDLLDFPVDDVDTAAASLPSVASVGNCNSLASIWPNESESFPTSDSVFSAGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSEGSLTMKKVEQQPSSCVPKEDSVHSQFQTSSPVSVLESSSSCSGGKTATGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSAGENVQPNVISTKAASSDFDNFAESRILAKKPKLASGETKKKKKIKMTLPAAAQSDSGDQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPALHSNSHKKVLEMRCKDIENPGFESHSAASPELIPNTNSILALEYI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05012 349 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Trre1g05012 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 312 - -
Trre1g05012 349 PIRSF Txn_fac_GATA_plant 3 341 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre1g05012 349 FunFam GATA transcription factor 244 332 - -
Trre1g05012 349 Gene3D - 252 299 IPR013088 GO:0006355|GO:0008270
Trre1g05012 349 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
Trre1g05012 349 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Trre1g05012 349 PANTHER GATA TRANSCRIPTION FACTOR 16 331 - -
Trre1g05012 349 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
Trre1g05012 349 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Trre1g05012 349 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05012 Trre-Chr1 56316914 56319268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05012 10 323 C2C2-Gata Transcription Factor Family AT1G08010 35.987 1.69e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre1g05012 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05012 - - gmx:100816641 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05012 1 56316914 56319268 Trre1g05012 1 56316914 56319268 ECH