Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05003 ATGGCAAAGAAAACTCACTCTTCTCGTCAACCTTCATCACAAACCCCACATGCAAAAAAACCCACTCAAGATGATGTTGATTCATCACTAACAACACCCCCTCCTTCAAAACCCTCACCCCCTTCTCAACCACCTCCCTCTTCTAACCCCTCCCGTCCTAACCGTTCCAAAAAACCAACACCCGTCGCCGCCGCTGCAGCTGCCGCCAAATCCTCCAAGAAGTCTCCTACCCCTTTCTCCAAAAACGATGTAATCCTCATCCTCAAAGCTCTTTCAGATTTCAAATCTCAAACTGGAAACGATCCAACCAAACACACCGAAGAATTTCATGACTCATTGAAGGATTCTCTTAGCATAAAAACTACTGTTAGGAAGCTAAGAGAAAAGGTTCGAGTTTTGAAGCTGAAATTTGAGAAGATCCGTGAAAACAATGAAAAAGATCTTACTTTTTCTAGCTCTCATGAGAAGGAAGTTTTTGAACTTTCTAACAAATTTTGGGGTCAAGAGGAAAGAGTTGAAGAAAAAGAAAAAACACCCAAGAAGAAAAAAGTTGCTAAGAAGCCTGCAAAGGAAGAATCTGAAAAGGGTGAAAGTAGTGATAAAATGGGTCATCTTAATTTGAGTGAAAGTTTGGTTTTTGATGAAATGTGTATGGGTTTGAATGTGTTGAAGAGGGGGTTGGAATTGATTGGTGAAGAAGAGAGGGAAGAGTTGGTAACAAGGTGGAAGAAGTTGAAAGCTAAGGAAATGGAAGTGTTAGTGATGCGTGCTGAGTTGGTTAAAGATCATGCTAGGTTGATCTTGAATGAATTAGATGGATGA 822 0.4075 MAKKTHSSRQPSSQTPHAKKPTQDDVDSSLTTPPPSKPSPPSQPPPSSNPSRPNRSKKPTPVAAAAAAAKSSKKSPTPFSKNDVILILKALSDFKSQTGNDPTKHTEEFHDSLKDSLSIKTTVRKLREKVRVLKLKFEKIRENNEKDLTFSSSHEKEVFELSNKFWGQEERVEEKEKTPKKKKVAKKPAKEESEKGESSDKMGHLNLSESLVFDEMCMGLNVLKRGLELIGEEEREELVTRWKKLKAKEMEVLVMRAELVKDHARLILNELDG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05003 273 PANTHER BNAANNG10740D PROTEIN-RELATED 6 270 IPR007592 GO:0006355
Trre1g05003 273 Coils Coil 123 143 - -
Trre1g05003 273 MobiDBLite consensus disorder prediction 1 81 - -
Trre1g05003 273 MobiDBLite consensus disorder prediction 33 52 - -
Trre1g05003 273 MobiDBLite consensus disorder prediction 170 202 - -
Trre1g05003 273 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g05003 273 Pfam Protein of unknown function, DUF573 79 167 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05003 Trre-Chr1 56205287 56206108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05003 22 167 GeBP Transcription Factor Family AT1G61730 31.579 2.90e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre1g05003 DUF573 8.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05003 - - tpra:123919552 284.263