Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05001 ATGGGAAGTAAATGGAAAAAAGCAAAGGTTGCTCTTGGTCTTAATCTTTGCATGTTTGTTCCTAGAACATTAGATGATGATTTTCCACCTTCTACGGTGGTTTCTGAGAGGTTGTCTGATGCTGCTCTTCTCTCACCGGCCAACTATCAGAAGGGTTCTTCCCGGCCAACTACTCCGGTGTCATCTTTTCATGGTTTGAAACTCTCTAAAAGTAGTAGCAAATCTTCAAAGCAAACCTGCGCGATATGCTTAGCCAAAATGAAGCAAGGATCCGGTCAAGCTATATTCACTGCTGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGGAACCAAATATGTCCAGTGTGCCGAGCAAAGTGGAAGGAAATACCATTGTCGGGTTCCACCTTGACTCCTATCCAAGGAAGAGTAACGCCAAGTCCAATAAATTGGCCTCAAAATGACGCTTTGATGGCTGTGGTCCACCGCCTACCTTTACCCCATCCTCGCCGAGATTTGAATAGGCGGCATATTGTGCCACTTTATCAGGCTTCTGAGCCAGGCATATTTGATGATGACGAATCCTTAAATCACCAACATGCAATTTCTGAGAGAAGTACTACCGATGCTGTTCGAGCAATGGAGATTAAAACATACCCGGAGGTGTCTTCCGCACCAAGGTCCAATACTTATTCTAACTTCACAGTTTTGGTTCATCTCAAAGCGACTGCTGCAGCAGCGTCATCTGCCAAAAGACAAAACCTTAGCAGAAACCAGGCTAGCTTGACGCAGATTTCGCACTCTCCACGTGCCCCAGTTGACTTGGTCACGGTGCTTGACGTCAGTGGTAGCATGGCGGGAACTAAGCTTGCACTACTAAAAAGGGCAATGGGGTTTGTTATACAGAACCTAGGCACTAATGACCGGCTTTCTGTCATCGCTTTCTCTTCCACAGCTCGCCGCCTCTTTCCATTGTGTAAGATGACTGATTCCGGACGGCAACAGGCATTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATTGCCGAAGGGCTGAGAAAAGGTGCTAAGATAATGGAAGATCGAAAAGAAAAGAATCCAGTTGCGAGTATTATTCTTTTGTCAGATGGGCAGGATAATTACACTGTCGGCGGCTCTGTAAATGTCCAACCTCAACCGAATTACCATTTGCTTCTTCCTACTTCCATCAGTGGTCGCGATAATTCTGGATTTCAAATTCCTGTGCATGCTTTTGGGTTTGGTGCAGACCATGATGCTTCATCAATGCATTCGATTTCAGAGATCTCTGGTGGCACATTTTCATTCATTGAAACTGAAGCCGTGTTACAGGATGCATTTGCACAGTGTATCGGAGGACTACTTAGTGTTGTTATTCAAGAGTTGCAAGTGGCAATTGAGTGTGTGCACCCAGATCTCGGTCTTGTTTCACTTAAAGCCGGAAGTTATCCAAGCCGTTTGATGGCTGATGGACGCAAAGGAGTTCTCGACGTTGGCGACTTGTATGCTGATGAGGAGAGGGATTTTCTTGTTACGGTTAATGTTCCAGCTACGTCCGGCAATGAAACATCATTGATAAAGGTCGAATGTGTTTACAAGGATCCCTTGACTCAAGAAACCGCAACAATTGAAAGCGATGAAGTAAAGATTGATAGGCCCGAAATAGCCGAGCAGGTTATAATGTCTCTTGAAGTGGACAGACAACGCAACAGGCTCCAAGCAGCTGAGGCAATGGCACAGGCACGGACATCAGCTGAACGTGGAGACCTCACTGGAGCAGTATTAATCCTTGAAAACTGTCGGAAGATGCTTTCAGAGACTGTATCGGCTAAATCTCATGACCGCCTTTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCAAGTAGGCATGTGTACGAAGCATCTGGGAGAGCGTATATACTCTCCGGTTTGAGTTCACACTCATGGCAAAGAGCAACTGCAAGAGGCGATTCTACCGATAGTTCAAGTCTTGTTCAAGCGTATCAGACACCATCGATGGTTGAGATGCTTACTCGATCTCAGGCCATGTTACTGGGTAGTCCATCGGGTCAGAGGCTTCTCCAGCCACTTTTATCATACAGATCACAACCAAGCCCAAGGTAA 2166 0.4575 MGSKWKKAKVALGLNLCMFVPRTLDDDFPPSTVVSERLSDAALLSPANYQKGSSRPTTPVSSFHGLKLSKSSSKSSKQTCAICLAKMKQGSGQAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGSTLTPIQGRVTPSPINWPQNDALMAVVHRLPLPHPRRDLNRRHIVPLYQASEPGIFDDDESLNHQHAISERSTTDAVRAMEIKTYPEVSSAPRSNTYSNFTVLVHLKATAAAASSAKRQNLSRNQASLTQISHSPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGTNDRLSVIAFSSTARRLFPLCKMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVGGSVNVQPQPNYHLLLPTSISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVIQELQVAIECVHPDLGLVSLKAGSYPSRLMADGRKGVLDVGDLYADEERDFLVTVNVPATSGNETSLIKVECVYKDPLTQETATIESDEVKIDRPEIAEQVIMSLEVDRQRNRLQAAEAMAQARTSAERGDLTGAVLILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMVEMLTRSQAMLLGSPSGQRLLQPLLSYRSQPSPR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05001 721 CDD vWA_C3HC4_type 273 447 - -
Trre1g05001 721 Gene3D von Willebrand factor, type A domain 274 461 IPR036465 -
Trre1g05001 721 Pfam VWA / Hh protein intein-like 623 695 IPR032838 -
Trre1g05001 721 SMART ring_2 80 123 IPR001841 -
Trre1g05001 721 Pfam RING-like zinc finger 80 109 IPR001841 -
Trre1g05001 721 SMART VWA_4 272 459 IPR002035 -
Trre1g05001 721 SUPERFAMILY vWA-like 269 460 IPR036465 -
Trre1g05001 721 CDD RING-H2_WAVH2 78 129 - -
Trre1g05001 721 ProSiteProfiles VWFA domain profile. 274 460 IPR002035 -
Trre1g05001 721 SUPERFAMILY RING/U-box 76 130 - -
Trre1g05001 721 Coils Coil 619 639 - -
Trre1g05001 721 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 78 695 - -
Trre1g05001 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Trre1g05001 721 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Trre1g05001 721 Pfam von Willebrand factor type A domain 274 457 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05001 Trre-Chr1 56192178 56195401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05001 69 124 C3H Transcription Factor Family AT1G57730 42.857 2.92e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05001 - - gmx:100818239 1229.93