Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04997 ATGGATATCACAGTAACATCAAAAGAAATAATCAAACCATCATTGCCAACACCAAATGAACACAAATTCTTCAAACTATGTCTCTTTGATCAGCTTCAATTAATCACTTATTTACCAATGGTTTTGTTTTACCCCAAAAAAGAAGGCCTAACAGAAATATCCCATTTCATTGCTCAATTGAAAAAATCACTTTCTGAAACACTAACCATTTTCTACCCTATAGCAGGGAGAAGAAAAGACCACACATTTATCACTTGTAATGATGAAGGTGCTATTTACTTGGAAGCCAAGGTAAACCATACCATGATTGAATTCCTCAATCCACCTAAGCTAGAATTTCTAAATAAATTGCTTCCATGTGAGCCTAATAAGATGCATCAAAATGGAGAAGATTTATCACAAGTCCTTGTACAAGTTAACATGTTCAATTGTGGTGGAATAGCTATAGGTACTTGTAATCTCCATACCCTCTTAGACGGTTGTTCTGGCAGCCTTTTCAATACTACTTGGGCTGCCATTTGTCGAGGCTGCTCTAGCGGCGAATTACCACGCCCCGATTTCTTTTCCGCTTCTTCTTGCTTTCCAACAATAAATCATGTTAGTAAGAATACTAATGAGGACTTAGATGGACAAAAAAAATGTAGCACAAGAAGATTTGTGTTTGGTTCTGAATCCATTGACACTCTAAGAGATGAAGCAAAAGACGACAACGACGATGACAATGATGATGGAAGATCAAAGTTTCCTACAAGATATGAAGCATTGGCTGCTTTTATTTGGAAACACATGACACTTGCATGTAAAATGGAGGGAGGTGTAGATAGCAAAAGACCAACATTGGCTATACATATTGTAGACATGAGGAGAAGGATGGGTGAGCCTTTTTCTAAATACACAATAGGCAACATTTTATGGCCAGTGATGGTGTTATGTGAAGAAGTTAATGAAGAAACTGATATTAAATATTTGGTTAAAATTTCTAAGGAAAAATTTGGGAAAATTTCAAGGGAATTATTTTTAAGAGTGAAGAGTGATCCAAGTATGTTAGGGAGCAATGAATGTGTGGATTTGCCACAAGGTATAGAAACAACAAGACCAATTCCAGTTGTTTTGACAAGTTGGTGTGGTTTGAATTTTAGTGAGCTTGATTTTGGTTGGGGGAAACCTTTTTGGGTTGGTGTTAGAGGTGGTAATCAAGAAACTCTTCCTAATGTAGCTGTTATTATGGAAACATATGAAGGCATGGAAGCTTGGGTGACAATGGAAATGCAACATATAGCTAACTTGGAAAATGATATGGAGTTTCTTAAATTAGCTTTGTCTAATCCTAGTGTTTCAAACATTTAG 1347 0.3623 MDITVTSKEIIKPSLPTPNEHKFFKLCLFDQLQLITYLPMVLFYPKKEGLTEISHFIAQLKKSLSETLTIFYPIAGRRKDHTFITCNDEGAIYLEAKVNHTMIEFLNPPKLEFLNKLLPCEPNKMHQNGEDLSQVLVQVNMFNCGGIAIGTCNLHTLLDGCSGSLFNTTWAAICRGCSSGELPRPDFFSASSCFPTINHVSKNTNEDLDGQKKCSTRRFVFGSESIDTLRDEAKDDNDDDNDDGRSKFPTRYEALAAFIWKHMTLACKMEGGVDSKRPTLAIHIVDMRRRMGEPFSKYTIGNILWPVMVLCEEVNEETDIKYLVKISKEKFGKISRELFLRVKSDPSMLGSNECVDLPQGIETTRPIPVVLTSWCGLNFSELDFGWGKPFWVGVRGGNQETLPNVAVIMETYEGMEAWVTMEMQHIANLENDMEFLKLALSNPSVSNI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04997 448 Gene3D - 211 439 IPR023213 -
Trre1g04997 448 PANTHER F21J9.9 4 437 - -
Trre1g04997 448 Gene3D - 1 205 IPR023213 -
Trre1g04997 448 Pfam Transferase family 1 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04997 Trre-Chr1 56142773 56144119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04997 1 430 Monolignol Biosynthesis Gene Families AT5G48930 22.667 4.73e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04997 - K13065 gmx:102668997 685.256