Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04994 ATGAAGAGTTTTTCTAGCTTAGGACGACCGTTCAAATTGAACTTTCAATATGCTACGAAAGTTAAACCTGCCGAAGGTAATTCTGTGTCGCCATTGCTGTACGCTATTCCTCATCCAAGTGAGTTATTTGCAACCGACTACGACACTAATTATTTAGTGGATCTTATGGGTAGGCTGCATGGTGTTGGTGCTGAAAAGACATATGAGCGGAATGGCGTGCAATCAAAAATGGTTGTTATCGAATTGGATAACGATGGTTATCGTTTCAAATGTACACTTTTTGGTGAGTTTGTTGACGTACTGAACGCTTTCATTGCGTCGGGAGAAACACAGAATGTTATTGTCATGCTAATGCTGGCTAAAGTGAAAAAGTTTCAAGGAAGGGCTACGGTTCAAAACACTCTTTGTGCATCAAAGTTGCTTTTCAATCCCGAATATACTATCGCTGTGGATTTGAGGAAGAGGATGATGGGTAAGGATGATTCACCTTCTCCTGCTATATGCATATTGCAAGATACTTCTAAGATTAGCCTTGAAGATGATTTTTTGAAGGCAACCCCGATTACTACCATTGAAGCTCTTAAGGATAACAAAATGGAGACAAATTTGGTTGTATGCGGCACTGTCAAAGCAATACTTGATGAATCTGATTGGTTTTACACTGCTTGCCTTTGCAACAAAAAAGTATATCCGGATGAGAGGATGTATTTTTGTGAGAAGTGTAACAAGCATGTTGTTACTGTCTTTCCAAGATATCGTCTGAAGTTGCGAGTTATCGATTCCACTGATTCGGCAACATTCGTCGTGTTTGACCGCGACACTGCTGAACTCTTCAAGAAATCATGCTCCGACATGATTGATTCCATGGGACCTAACTGTGATGGTCCGCCAAAGGAGTTACTGGACATGATGGAGAAGACTTATCTTTTTAAAGTTGAGACCAATGTCAAAGAGGAAACCAGATTTGAAAAATCTTATAGAGTTAAAAGGTTGACTGACAATGCCGATTTAATTGCTAGATTCAAATCAAAATATTCGGTCGTTGAGTCTGTTGATGGTGGTTTGGAGGTTTCTATTGGTAACAGTGTCGAAGTGATGAAGAACGGTGATGCATCTGCCGAGAATGTTGTTCAGGATTTGCTCAACAAATTTAGTGATGAGGCAGTCTCTGTTGACAAGGAAATTATTGATGTTGATGACATTGCTGATGGTGTTGGTAGTAGTTCAAAGAGGGACTTTTCATTTTCTGGATCAAATGGTGGGGATGCCACCCCCATTTTAAAGAAAGTAAAGATTGAGAAGGAGTGA 1308 0.3998 MKSFSSLGRPFKLNFQYATKVKPAEGNSVSPLLYAIPHPSELFATDYDTNYLVDLMGRLHGVGAEKTYERNGVQSKMVVIELDNDGYRFKCTLFGEFVDVLNAFIASGETQNVIVMLMLAKVKKFQGRATVQNTLCASKLLFNPEYTIAVDLRKRMMGKDDSPSPAICILQDTSKISLEDDFLKATPITTIEALKDNKMETNLVVCGTVKAILDESDWFYTACLCNKKVYPDERMYFCEKCNKHVVTVFPRYRLKLRVIDSTDSATFVVFDRDTAELFKKSCSDMIDSMGPNCDGPPKELLDMMEKTYLFKVETNVKEETRFEKSYRVKRLTDNADLIARFKSKYSVVESVDGGLEVSIGNSVEVMKNGDASAENVVQDLLNKFSDEAVSVDKEIIDVDDIADGVGSSSKRDFSFSGSNGGDATPILKKVKIEKE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04994 435 CDD RPA1_DBD_C 205 333 IPR047192 -
Trre1g04994 435 Gene3D - 180 341 IPR012340 -
Trre1g04994 435 Gene3D - 40 162 IPR012340 -
Trre1g04994 435 PANTHER OS03G0429900 PROTEIN 73 329 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre1g04994 435 CDD RPA1_DBD_B_like 54 157 - -
Trre1g04994 435 SUPERFAMILY Nucleic acid-binding proteins 187 319 IPR012340 -
Trre1g04994 435 SUPERFAMILY Nucleic acid-binding proteins 45 155 IPR012340 -
Trre1g04994 435 Pfam Replication factor-A C terminal domain 206 320 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04994 Trre-Chr1 56114287 56117522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04994 35 329 Core DNA Replication Machinery Family AT4G19130 27.103 6.02e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04994 - - tpra:123887545 401.364