Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04993 ATGTACGTAAATGAGAAAGAAGAAAGTAGTGGAAGAAAACCTGTGTTGTGTTCTTCATTTTCTTTTTGGAAAACGATTTCTGAAGCTTATGTGTTGCTTCCATTCTTGCTTGCGATTGCGACGACGGTTTCAGTGATGTTGATGATTGAAGACGACGGCGACGACGGTAATTCTGTGTCGCCATTGCTGTACGCTATTCCTCATCCAAGTGAGTTATTTGCAACCGACTACGACACTAATTATTTAGTGGATCTTATGGGTAGGCTGCATGGTGTTGGTGCTGAAAAGACATATGAGCGGAATGGCGTGCAATCAAAAATGGTTGTTATCGAATTGGATAACGATGGTTATCGTTTCAAATGTACACTTTTTGGTGAGTTTGTTGACGTACTGAACGCTTTCATTGCGTCGGGAGAAACACAGAATGTTATTGTCATGCTAATGCTGGCTAAAGTGAAAAAGTTTCAAGGAAGGGCTACGGTTCAAAACACTCTTTGTGCATCAAAGTTGCTTTTCAATCCCGAATATACTATCGCTGTGGATTTGAGGAAGAGGATGATGGGTAAGGATGATTCACCTTCTCCTGCTATATGCATATTGCAAGATACTTCTAAGATTAGCCTTGAAGATGATTTTTTGAAGGCAACCCCGATTACTACCATTGAAGCTCTTAAGGATAACAAAATGGAGACAAATTTGGTTGTATGCGGCACTGTCAAAGCAATACTTGATGAATCTGATTGGTTTTACACTGCTTGCCTTTGCAACAAAAAAGTATATCCGGATGAGAGGATGTATTTTTGTGAGAAGTGTAACAAGCATGTTGTTACTGTCTTTCCAAGATATCGTCTGAAGTTGCGAGTTATCGATTCCACTGATTCGGCAACATTCGTCGTGTTTGACCGCGACACTGCTGAACTCTTCAAGAAATCATGCTCCGACATGATTGATTCCATGGGACCTAACTGTGATGGTCCGCCAAAGGAGTTACTGGACATGATGGAGAAGACTTATCTTTTTAAAGTTGAGACCAATGTCAAAGAGGAAACCAGATTTGAAAAATCTTATAGAGTTAAAAGGTTGACTGACAATGCCGATTTAATTGCTAGATTCAAATCAAAATATTCGGTCGTTGAGTCTGTTGATGGTGGTTTGGAGGTTTCTATTGGTAACAGTGTCGAAGTGATGAAGAACGGTGATGCATCTGCCGAGAATGTTGTTCAGGATTTGCTCAACAAATTTAGTGATGAGGCAGTCTCTGTTGACAAGGAAATTATTGATGTTGATGACATTGCTGATGGTGTTGGTAGTAGTTCAAAGAGGGACTTTTCATTTTCTGGATCAAATGGTGGGGATGCCACCCCCATTTTAAAGAAAGTAAAGATTGAGAAGGAGTGA 1398 0.402 MYVNEKEESSGRKPVLCSSFSFWKTISEAYVLLPFLLAIATTVSVMLMIEDDGDDGNSVSPLLYAIPHPSELFATDYDTNYLVDLMGRLHGVGAEKTYERNGVQSKMVVIELDNDGYRFKCTLFGEFVDVLNAFIASGETQNVIVMLMLAKVKKFQGRATVQNTLCASKLLFNPEYTIAVDLRKRMMGKDDSPSPAICILQDTSKISLEDDFLKATPITTIEALKDNKMETNLVVCGTVKAILDESDWFYTACLCNKKVYPDERMYFCEKCNKHVVTVFPRYRLKLRVIDSTDSATFVVFDRDTAELFKKSCSDMIDSMGPNCDGPPKELLDMMEKTYLFKVETNVKEETRFEKSYRVKRLTDNADLIARFKSKYSVVESVDGGLEVSIGNSVEVMKNGDASAENVVQDLLNKFSDEAVSVDKEIIDVDDIADGVGSSSKRDFSFSGSNGGDATPILKKVKIEKE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04993 465 Gene3D - 70 192 IPR012340 -
Trre1g04993 465 Pfam Replication factor-A C terminal domain 236 350 IPR013955 -
Trre1g04993 465 CDD RPA1_DBD_C 235 363 IPR047192 -
Trre1g04993 465 CDD RPA1_DBD_B_like 84 187 - -
Trre1g04993 465 SUPERFAMILY Nucleic acid-binding proteins 217 349 IPR012340 -
Trre1g04993 465 SUPERFAMILY Nucleic acid-binding proteins 75 185 IPR012340 -
Trre1g04993 465 PANTHER OS03G0429900 PROTEIN 102 359 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre1g04993 465 Gene3D - 210 371 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04993 Trre-Chr1 56114287 56117973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04993 65 359 Core DNA Replication Machinery Family AT4G19130 26.791 1.39e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04993 - - tpra:123887545 383.645