Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04992 ATGTTCAAATTGAACTTTCAATATGCTACGAAAGTTAAACCTGCCGAAGGTAATTCTGTGTCGCCATTGCTGTACGCTATTCCTCATCCAAGTGAGTTATTTGCAACCGACTACGACACTAATTATTTAGTGGATCTTATGGGTAGGCTGCATGGTGTTGGTGCTGAAAAGACATATGAGCGGAATGGCGTGCAATCAAAAATGGTTGTTATCGAATTGGATAACGATGGTTATCGTTTCAAATGTACACTTTTTGGTGAGTTTGTTGACGTACTGAACGCTTTCATTGCGTCGGGAGAAACACAGAATGTTATTGTCATGCTAATGCTGGCTAAAGTGAAAAAGTTTCAAGGAAGGGCTACGGTTCAAAACACTCTTTGTGCATCAAAGTTGCTTTTCAATCCCGAATATACTATCGCTGTGGATTTGAGGAAGAGGATGATGGGTAAGGATGATTCACCTTCTCCTGCTATATGCATATTGCAAGATACTTCTAAGATTAGCCTTGAAGATGATTTTTTGAAGGCAACCCCGATTACTACCATTGAAGCTCTTAAGGATAACAAAATGGAGACAAATTTGGTTGTATGCGGCACTATCAAAGCAATACTTGATGAATCTGATTGGTTTTACACTGCTTGCCTTTGCAACAAAAAAGTATATCCGGATGAGAGGATGTATTTTTGTGAGAAGTGTAACAAGCATGTTGTTACTGTCTTTCCAAGATATCGTCTGAAGTTGCGAGTTATCGATTCCACTGATTCGGCAACATTCGTCGTGTTTGACCGCGACACTGCTGAACTCTTCAAGAAATCATGCTCCGACATGATTGATTCCATGGGACCTAACTGTGATGGTCCGCCAAAGGAGTTACTGGACATGATGGAGAAGACTTATCTTTTTAAAGTTGAGACCAATGTCAAAGAGGAAACCAGATTTGAAAAATCTTATAGAGTTAAAAGGTTGACTGACAATGCCGATTTAATTGCTAGATTCAAATCAAAATATTCGGTCGTTGAGTCTGTTGATGGTGGTTTGGAGATTTCTATTGGTAACAGTGTCGAAGTGATGAAGAACGGTGATGCATCTGCCGAGAATGTTGTTCAGGATTTGCTCAACAAATTTAGTGATGAGGCAGTCTCTGTTGACAAGGAAATTATTGATGTTGATGACATTGCTGATGGTGTTGGTAGTAGTTCAAAGAGGGACTTTTCATTTTCTGGATCAAATGGTGGGGATGCCACCCCCGTTTTAAAGAAAGTAAAGATTGAGAAGGAGTGA 1281 0.3981 MFKLNFQYATKVKPAEGNSVSPLLYAIPHPSELFATDYDTNYLVDLMGRLHGVGAEKTYERNGVQSKMVVIELDNDGYRFKCTLFGEFVDVLNAFIASGETQNVIVMLMLAKVKKFQGRATVQNTLCASKLLFNPEYTIAVDLRKRMMGKDDSPSPAICILQDTSKISLEDDFLKATPITTIEALKDNKMETNLVVCGTIKAILDESDWFYTACLCNKKVYPDERMYFCEKCNKHVVTVFPRYRLKLRVIDSTDSATFVVFDRDTAELFKKSCSDMIDSMGPNCDGPPKELLDMMEKTYLFKVETNVKEETRFEKSYRVKRLTDNADLIARFKSKYSVVESVDGGLEISIGNSVEVMKNGDASAENVVQDLLNKFSDEAVSVDKEIIDVDDIADGVGSSSKRDFSFSGSNGGDATPVLKKVKIEKE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04992 426 Gene3D - 171 332 IPR012340 -
Trre1g04992 426 Pfam Replication factor-A C terminal domain 197 311 IPR013955 -
Trre1g04992 426 SUPERFAMILY Nucleic acid-binding proteins 36 146 IPR012340 -
Trre1g04992 426 CDD RPA1_DBD_B_like 45 148 - -
Trre1g04992 426 Gene3D - 31 153 IPR012340 -
Trre1g04992 426 SUPERFAMILY Nucleic acid-binding proteins 178 310 IPR012340 -
Trre1g04992 426 MobiDBLite consensus disorder prediction 397 417 - -
Trre1g04992 426 CDD RPA1_DBD_C 196 324 IPR047192 -
Trre1g04992 426 PANTHER OS03G0429900 PROTEIN 64 321 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04992 Trre-Chr1 56108364 56113062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04992 26 320 Core DNA Replication Machinery Family AT4G19130 27.103 3.89e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04992 - - tpra:123887545 398.667