Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04991 ATGAATGTAGACTATTACAGCAAGCAATTTGATATGTTTCAATATTATGAGAAGTTCAAATTGAACTTTCAATATGCTACGAAAGTTAAACCTGCCGAAGGTAATTCTGTGTCGCCATTGCTGTACGCTATTCCTCATCCAAGTGAGTTATTTGCAACCGACTACGACACTAATTATTTAGTGGATCTTATGGGTAGGCTGCATGGTGTTGGTGCTGAAAAGACATATGAGCGGAATGGCGTGCAATCAAAAATGGTTGTTATCGAATTGGATAACGATGGTTATCGTTTCAAATGTACACTTTTTGGTGAGTTTGTTGACGTACTGAACGCTTTCATTGCGTCGGGAGAAACACAGAATGTTATTGTCATGCTAATGCTGGCTAAAGTGAAAAAGTTTCAAGGAAGGGCTACGGTTCAAAACACTCTTTGTGCATCAAAGTTGCTTTTCAATCCCGAATATACTATCGCTGTGGATTTGAGGAAGAGGATGATGGGTAAGGATGATTCACCTTCTCCTGCTATATGCATATTGCAAGATACTTCTAAGATTAGCCTTGAAGATGATTTTTTGAAGGCAACCCCGATTACTACCATTGAAGCTCTTAAGGATAACAAAATGGAGACAAATTTGGTTGTATGCGGCACTATCAAAGCAATACTTGATGAATCTGATTGGTTTTACACTGCTTGCCTTTGCAACAAAAAAGTATATCCGGATGAGAGGATGTATTTTTGTGAGAAGTGTAACAAGCATGTTGTTACTGTCTTTCCAAGATATCGTCTGAAGTTGCGAGTTATCGATTCCACTGATTCGGCAACATTCGTCGTGTTTGACCGCGACACTGCTGAACTCTTCAAGAAATCATGCTCCGACATGATTGATTCCATGGGACCTAACTGTGATGGTCCGCCAAAGGAGTTACTGGACATGATGGAGAAGACTTATCTTTTTAAAGTTGAGACCAATGTCAAAGAGGAAACCAGATTTGAAAAATCTTATAGAGTTAAAAGGTTGACTGACAATGCCGATTTAATTGCTAGATTCAAATCAAAATATTCGGTCGTTGAGTCTGTTGATGGTGGTTTGGAGATTTCTATTGGTAACAGTGTCGAAGTGATGAAGAACGGTGATGCATCTGCCGAGAATGTTGTTCAGGATTTGCTCAACAAATTTAGTGATGAGGCAGTCTCTGTTGACAAGGAAATTATTGATGTTGATGACATTGCTGATGGTGTTGGTAGTAGTTCAAAGAGGGACTTTTCATTTTCTGGATCAAATGGTGGGGATGCCACCCCCGTTTTAAAGAAAGTAAAGATTGAGAAGGAGTGA 1332 0.3934 MNVDYYSKQFDMFQYYEKFKLNFQYATKVKPAEGNSVSPLLYAIPHPSELFATDYDTNYLVDLMGRLHGVGAEKTYERNGVQSKMVVIELDNDGYRFKCTLFGEFVDVLNAFIASGETQNVIVMLMLAKVKKFQGRATVQNTLCASKLLFNPEYTIAVDLRKRMMGKDDSPSPAICILQDTSKISLEDDFLKATPITTIEALKDNKMETNLVVCGTIKAILDESDWFYTACLCNKKVYPDERMYFCEKCNKHVVTVFPRYRLKLRVIDSTDSATFVVFDRDTAELFKKSCSDMIDSMGPNCDGPPKELLDMMEKTYLFKVETNVKEETRFEKSYRVKRLTDNADLIARFKSKYSVVESVDGGLEISIGNSVEVMKNGDASAENVVQDLLNKFSDEAVSVDKEIIDVDDIADGVGSSSKRDFSFSGSNGGDATPVLKKVKIEKE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04991 443 CDD RPA1_DBD_C 213 341 IPR047192 -
Trre1g04991 443 Pfam Replication factor-A C terminal domain 214 328 IPR013955 -
Trre1g04991 443 Gene3D - 48 170 IPR012340 -
Trre1g04991 443 Gene3D - 188 349 IPR012340 -
Trre1g04991 443 SUPERFAMILY Nucleic acid-binding proteins 53 163 IPR012340 -
Trre1g04991 443 CDD RPA1_DBD_B_like 62 165 - -
Trre1g04991 443 PANTHER OS03G0429900 PROTEIN 79 338 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre1g04991 443 MobiDBLite consensus disorder prediction 414 434 - -
Trre1g04991 443 SUPERFAMILY Nucleic acid-binding proteins 195 327 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04991 Trre-Chr1 56108265 56113062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04991 43 337 Core DNA Replication Machinery Family AT4G19130 27.103 5.36e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04991 - - tpra:123887545 398.667