Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04990 ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAATTTTGGGATATGCAAGATTATCCCACCCTTACCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGGTCTAGATAATAGTTCTTTAGGTGCTGGTAATTCTTGGAAAATGGGTTCCGATGGTAGTAACAGTGGGGTATCGCGGGCCGTGTTTACCACAAGGCAACAAGAAGTGGGGCAGAATGTGAAAAAAACCAAAGGGGGAGTTCAGAAACCACTGTCATGTGTTCATAAGCAAGTATGGCAAAGTGGAGAGGTTTATACATTGGACCAGTTTGAATCCAAATCGAAGTCTTTCGCAAGAAGCATTCTAGGTACATCGAAGGATGTTTCTCCATTGGTTGTAGAGACTATGTTTTGGAAGGCAGCTTTGGAGAAGCCTATATATGTGGAGTATGCCAATGACGTGCCTGGCTCTGCTTTTGGAGAATCACAGGGTCAATTTTATCATAGGCAGAGAAGGCAACGGAAAAGGACTTATTATAAGAGTAGTGTAGATAGCTCTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAAAGATACACAAAATGACGAGTCTAATGGCGTTGCTAGCCCAAGTAATGTGGACTCATGTTTAGAGATGTCTAAATCAGCTATGACTATGTCAACGTCTACACCAATTGAGGTGTTGCAGTCTTCTAAGGAGAAGAGTTCAGATGCCGACATTGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAATAGTCCTTGGAATTTGCAAGTTATTCCTCGCGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGCTCATCTAAGACTTGGTATTCTGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGCTGCTTTGAAACTTTTGGGTGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGGGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAATTTTGGGACTCCACAATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAACCATCTTCCTATGCTTTCCCATCAGCAACTACTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGCCAGAAAGAAGAAAGAGAGATTCTAGTTAAACAAGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTATCCATTCTTCTCGGAAAAAAAGCTACTAAACAAGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGCCGGTTGCCTGATTTAGCTTCTACTTCTGAGACCTATATGGCGGACATGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCGTTGTCTGCTTGATGAGATGAGTTTGTGCATGGAGAATCTGTCCGATTTATATGTTGGTTGTGATGAACTTCCAAGTCACTTCCAAACTGATTCAGGAGCATTGTCATGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACACTGATACAGCCAACTGAAAAATCGATAATGGAACTTCTTCCTGACAATCATCATCTAGTTAAAAATTCCTCTCTGAACTCTGTAGCCTCCCTTCACAATGCAGCCTCAAGGAATCTTTCTGTTTCTGAACTTGCTCCCGCAAAGGATTCTCAGAATCAGTCATTGAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAATTTTTGAAACCGCGAATTTTCTGCTTGGAGCATGCTGTTCAAATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTACAATTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAAATACAAAGTGCTTTTGATTATAATGAGGTTCCAATGGATATAGCATCCCCAGAAAACTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAGGAACTTAATGAATTTGAAGACTGGACGTCTAAACTAGGCCTTAACCTGCGATTTTGTGTCAATAATATAAACAAATCTCCATGTAAACAAGTTTCTCTGACACTAGCATTAGGGATACAGTTCTATGATAAACGTCCTGGTTTATCTTTAAATTGGCATTCAAGGAAAGCTCGGTCTAAAAGGTCAAACCGTATAGCTCAGGCTAAACCTGACAGCATTCAGAGAAAAACAGATGATCCATTGCATGGAAGAATTGATGACCCCACTGCTAAGAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGTAGCAAGCATGGTCCGTGAATCCCATGAAAAGTTAAAAAATGTGTCAGCTGTTTTGAGTGGCGATCATGACATACGTGTTTCTAAAGATGAGCTTGACACAGACAATTTCAGGAGTGACTGTGCATTGTCACGTGGATCTGCTTCTGCTGCAATGTCTCCAACGCATCCCCAGAATGCTGAAGCTCCCATCTATCCAAGCTTAAATACCAGTGTCTCAGAAATTTGTGGCAAAGAGAGCCAGGGTTGTCAGGACAAGGGATATTCTGGCTCACCTGCATATGGAATAGATGGAAATACCGATGTGTTTGGAAGCAACCAAATTACAGAAGCAATTGTCATCGATAGCAAGTGTAATAGCTTAGATTTGGATGGTGAAGAACATCAGTCTGCCTTCAAAAGCAACAGCAACGGTGAAGCTGCTTTATCCACTTCTTCATTGGTAAACCAACCTGCTCTCGCCACTGTGGGAGAAAGCAACAGCAATGGTGAAGCTGCTTTATCCACTTCTGAAGGAAAGGTTATCAATTCTATGTCATTAAAAGAGACAGTCGAGGGAGAAAGTAAGTCCTCGAATGAAATGGACAGGGAACCTCTAAATGATGATAAAGCAATAAGTGAACAGACTCCTAATACAGTAAGCTTGGATGCTAAGATGCAGCAAGAACGACAGCTTGGAAAAGGTGGAGAAAAGGAATTAATTCAGTCCACTCATATAGCAAAACAATTGTGTGAATCTACAAGTGGGGAATATGCCAAGGAATTGCACGATGGAGTGATTTCAGAGTCTGCGAAGCAGAGTCAGATCCAAAATGAGAATAAAACTAATGAGGAACCTGTTTCTAGTTATGTTGCAAAAGGTGACAATAAAAGTGCAACACTATCAGAAATAGGATGTTCTGAAGTTTCGGCAGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTTATTTCGAATGCAGAAAAGGAAATGGAAATCCACCCAATTAATAGAAGCGGTGAGGAACTTTCTGTATCAATCCACGAATGTTCTAAAACTGAGAAAAAGACATGTGGTAGAGAAAACGAAAATGGAAGCGAAATTGATCTGTTGCAAGATAATGGGAAGCTGCAAAGCTATGACTCGACTACTACAGTTCCCAGATCAAATGCTGAAAAGAAAAAAAAGAGGAAAGCGGAACACACAGCAATGGACCAATTCGATTGCAATGACTTTATAAGAAGTCCATGCGAGAGACTGAGACCAAGGGCTGGGAAGATTGCCACCACAGGCAAAAGTGGAGGGGACATCAGCCAACATAAAGAGGAAAATTCGGTAGCTAAAAGGACACGGAGGCCTCCTGAAGCTTCAGTTACTCACAAGGATAAAAAAGTAGACGTCGAAAAGCCGCACAAGGATAAAGAGGAAAATCCGGTTGCTAAAAGGACACGGGGGCCTCCTGAAGCTTCAGTTCCACACAAGGATAAAAAAGTCGATGTCAAAAAGCCGCACAAGTGTGACATTGACAATTGCCATATGAGTTTCACGACTAAAGCTGACTTACAGTTGCACAAACGTAACCTTTGCCCAGAAAAAGGGTGTGGTAAGAAAAAGTTCCGTTCCCACAAATACACGCTGATTCACCAGCGCGTTCATGAGGATGATAGGCCGTTTGAATGTCCATGGAAAGGCTGTTCCAAGTGTTTCAAGTGGGCATGGGCAATGACAGAGCATATAAGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTGGAGGGATGCGGCCTTTCTTTCAGATTTATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTATGTATAA 4482 0.4157 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGLDNSSLGAGNSWKMGSDGSNSGVSRAVFTTRQQEVGQNVKKTKGGVQKPLSCVHKQVWQSGEVYTLDQFESKSKSFARSILGTSKDVSPLVVETMFWKAALEKPIYVEYANDVPGSAFGESQGQFYHRQRRQRKRTYYKSSVDSSVCKETEMGGVKDTQNDESNGVASPSNVDSCLEMSKSAMTMSTSTPIEVLQSSKEKSSDADIDMQGTAGWKLSNSPWNLQVIPRASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLQENKLLSILLGKKATKQVVLWNADLLPDSGKYRRLPDLASTSETYMADMSNDNISSADKSSRCLLDEMSLCMENLSDLYVGCDELPSHFQTDSGALSCVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVKNSSLNSVASLHNAASRNLSVSELAPAKDSQNQSLNKCNKCWNTSSKFLKPRIFCLEHAVQIVEMLQSKGGANVLTICHSDYPKIKAHARAVAEEIQSAFDYNEVPMDIASPENLALIDLAIDGEEELNEFEDWTSKLGLNLRFCVNNINKSPCKQVSLTLALGIQFYDKRPGLSLNWHSRKARSKRSNRIAQAKPDSIQRKTDDPLHGRIDDPTAKKKLIQYSRRKFKSKQSCFSVASMVRESHEKLKNVSAVLSGDHDIRVSKDELDTDNFRSDCALSRGSASAAMSPTHPQNAEAPIYPSLNTSVSEICGKESQGCQDKGYSGSPAYGIDGNTDVFGSNQITEAIVIDSKCNSLDLDGEEHQSAFKSNSNGEAALSTSSLVNQPALATVGESNSNGEAALSTSEGKVINSMSLKETVEGESKSSNEMDREPLNDDKAISEQTPNTVSLDAKMQQERQLGKGGEKELIQSTHIAKQLCESTSGEYAKELHDGVISESAKQSQIQNENKTNEEPVSSYVAKGDNKSATLSEIGCSEVSAETCPKEDSCIQFISNAEKEMEIHPINRSGEELSVSIHECSKTEKKTCGRENENGSEIDLLQDNGKLQSYDSTTTVPRSNAEKKKKRKAEHTAMDQFDCNDFIRSPCERLRPRAGKIATTGKSGGDISQHKEENSVAKRTRRPPEASVTHKDKKVDVEKPHKDKEENPVAKRTRGPPEASVPHKDKKVDVKKPHKCDIDNCHMSFTTKADLQLHKRNLCPEKGCGKKKFRSHKYTLIHQRVHEDDRPFECPWKGCSKCFKWAWAMTEHIRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYV 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04990 1493 ProSitePatterns Zinc finger C2H2 type domain signature. 1437 1459 IPR013087 -
Trre1g04990 1493 SMART cupin_9 290 459 IPR003347 -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1040 1091 - -
Trre1g04990 1493 ProSiteProfiles Zinc finger C2H2 type domain profile. 1465 1493 IPR013087 -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 829 862 - -
Trre1g04990 1493 Gene3D Classic Zinc Finger 1432 1460 - -
Trre1g04990 1493 SMART c2h2final6 1381 1403 IPR013087 -
Trre1g04990 1493 SMART c2h2final6 1435 1459 IPR013087 -
Trre1g04990 1493 SMART c2h2final6 1465 1491 IPR013087 -
Trre1g04990 1493 SMART c2h2final6 1404 1429 IPR013087 -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1070 1087 - -
Trre1g04990 1493 FunFam Probable lysine-specific demethylase ELF6 1432 1461 - -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1233 1278 - -
Trre1g04990 1493 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1431 - -
Trre1g04990 1493 Pfam JmjC domain, hydroxylase 324 442 IPR003347 -
Trre1g04990 1493 ProSiteProfiles JmjC domain profile. 290 459 IPR003347 -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1245 1264 - -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 845 862 - -
Trre1g04990 1493 ProSiteProfiles Zinc finger C2H2 type domain profile. 1435 1464 IPR013087 -
Trre1g04990 1493 SMART JmjN_1 15 55 IPR003349 -
Trre1g04990 1493 SUPERFAMILY beta-beta-alpha zinc fingers 1416 1471 IPR036236 -
Trre1g04990 1493 ProSitePatterns Zinc finger C2H2 type domain signature. 1467 1491 IPR013087 -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1040 1069 - -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1300 1376 - -
Trre1g04990 1493 Pfam jmjN domain 17 50 IPR003349 -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1146 1166 - -
Trre1g04990 1493 Gene3D Classic Zinc Finger 1461 1491 - -
Trre1g04990 1493 MobiDBLite consensus disorder prediction 1313 1376 - -
Trre1g04990 1493 Gene3D Cupin 9 463 - -
Trre1g04990 1493 ProSiteProfiles Zinc finger C2H2 type domain profile. 1381 1410 IPR013087 -
Trre1g04990 1493 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Trre1g04990 1493 SUPERFAMILY Clavaminate synthase-like 291 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04990 Trre-Chr1 56030116 56038322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04990 1 875 C2H2 Transcription Factor Family AT5G04240 54.917 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g04990 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04990 - - gmx:100819845 1929.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04990 1 56030116 56038322 Trre1g04990 1 56030116 56038322 ECH