Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04989 ATGTGCAAATCAAAAAAGAGCACCACCGTGGTACAACCCACAAGAAGAAGAATCTCAACAACATCATCTTCTTCCAACACCGAATTCCCAATCACAGAATCAACAAGTTACGTATACGGCGGTGACAACAAAGATAAACAATGGTCCAAAACTTCTTCATCAGTTTCAAGTCACTCTTCTCTTTCAAGCCTCAAACAATCTCTCCCTGAAAATCCTCACATCTATCCTTTCTCCGAAATCTCAACTGCCACCGCTAACTTCTCCACCAACCGTCTATCCACCAATTCTTTCCGTTGTTATCTTCGCGATCGCGATGTCGTCGTTTTCCAGCGGAAATTCCGCCGGAAAATAGACATCCCGGAGCTTCGTGATCGACTTGCTCTTATCTGCCGGAGTCATCATAGCAGCTTAGTGAAGCTTCTCGGAGCTTCTGTCTCCGGTGGATACATTTATCTTGTTTATGAATTTGTTTCCGGTGGTAGTCTTTCCGATTGTCTTCGAAATCGTCGGAACCCTAGCTTTACTAATCTCTCGACGTGGACTTCGAGGATGCAAATTGCTTCCGATCTCGCTCACGGTCTTGATTATGTTCATAATTCTTCCGGTTCTGGTTCTGGTTTCGTTCATAATCATATTAAAAGCTCTAGCATCATCGTCTCCGAGGAGAATTTTGCCGCTAAGATTTGTCACTTCGGTACATCGGAGCTCTGTGGTGAGTCGGTTGCCGTCGGAGATTCTTCTGTATCGGATAAAAAATTGAAGAGGTCTGGTAGCCGGGGAGTGAGATTTGAGGGGACGAGGGGTTACATGGCGCCGGAATTTCAGGTAACCGGCGTTGCGACGCAGAAGACGGACGTGTACGCGTTTGGCGTGGTGATTCTGGAGCTTCTGAGTGGTTTAGAAGCGGTGAGATTTGAATTGGAGGGAAATGACGGCGGGTATAGGAGGGTGAGTGTGGTGGATACGGCGAGGGAAGCGTTGGAGGAGCACGGTGGTGTGAGAAAATGGGTTGATCGGAGATTGAAGGATTCGTTTCCGATGGATGTGGCTGAGAAAATAATCCGGGTCGGGTTAGAGTGTGTTGCGGATGATCCGAAAGAGAGACCGGGTATGGGTCGGGTATCGATGGAACGCCACGCTGATGCTACTTTTTATATTTTGTTAGGTGTCATATGA 1176 0.4728 MCKSKKSTTVVQPTRRRISTTSSSSNTEFPITESTSYVYGGDNKDKQWSKTSSSVSSHSSLSSLKQSLPENPHIYPFSEISTATANFSTNRLSTNSFRCYLRDRDVVVFQRKFRRKIDIPELRDRLALICRSHHSSLVKLLGASVSGGYIYLVYEFVSGGSLSDCLRNRRNPSFTNLSTWTSRMQIASDLAHGLDYVHNSSGSGSGFVHNHIKSSSIIVSEENFAAKICHFGTSELCGESVAVGDSSVSDKKLKRSGSRGVRFEGTRGYMAPEFQVTGVATQKTDVYAFGVVILELLSGLEAVRFELEGNDGGYRRVSVVDTAREALEEHGGVRKWVDRRLKDSFPMDVAEKIIRVGLECVADDPKERPGMGRVSMERHADATFYILLGVI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04989 391 Gene3D Transferase(Phosphotransferase) domain 1 157 384 - -
Trre1g04989 391 Gene3D Phosphorylase Kinase; domain 1 45 156 - -
Trre1g04989 391 SUPERFAMILY Protein kinase-like (PK-like) 98 375 IPR011009 -
Trre1g04989 391 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g04989 391 Pfam Protein tyrosine and serine/threonine kinase 119 374 IPR001245 GO:0004672|GO:0006468
Trre1g04989 391 PANTHER OS09G0572100 PROTEIN 1 377 - -
Trre1g04989 391 ProSiteProfiles Protein kinase domain profile. 86 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04989 Trre-Chr1 56026279 56028150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04989 70 374 Receptor kinase-like Gene Family AT1G51940 34.069 6.32e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre1g04989 PK_Tyr_Ser-Thr 3.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04989 - - mtr:11414164 588.956