Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04985 ATGAATGACAATGACCAAATTAACCCTGCTGTTCTTCCTCTTATTACTCAGCTTGTTTATAGCAGAATTTCCAATTTGACTTCAATTCTTAGTCACCAAATTAGTGCTGACTCCAATTTCTGTGTCAAAGATCCGGATTCTGATTGGAATCAAGCCTTTAATTTTTCATCAAATTTGGGCTTCTTGGAATCTTGCATTAAAAAGACAAAAGGAGATATTTCAAACCGCTTGTGTACAGCCGCAGAAGTAAAGTTTTACTTAAATAGTTTAATGGAGAAATCCACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTTTCTGGTTGTGAGCCCGGATGGGCATGTCGTGTTCCTCCCTCAAGCCAGAAGATTGACCTTAGAGATTCAAAGGAGATGCCTTCTAGAACTTCAAACTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCACGGTCTCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACGCTCAATAAAACAACTGGTGTATGTGAACCATATCTTTATCAACTACCTCCAATGAAGCCAAACCATACCTGCGGAGGAGCAAATACTTGGGCCGATTTCAGTAGCAGTAGTGAAACATTTTGCTCGGCAGGATCCTATTGTCCAACAACCACCCAAAAATTGCCTTGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACATCCGAGAAAAGATGTTTCAAACTGAGTTCATGTAATTCAAATACAGCAACCCAAAACATGCATGCATATGGAATTATGCTCATTGCAGCTTTGAGTACATTGCTACTCATTATTTACAACTGTTCCGACCAAGTTCTCACTACTAGGGAAAGGAGAGTGGCAAAATCAAGAGAAGCAGCGGCTAGAAGTGCAAGGAAAACTGCAAATGCACACCAAAAATGGAAATCTGCAAAAGATGCTGCTAAGAAGGGTGCATCTGGGCTGCAAGCTCAGTTATCACGCAAATTCTCTCGTAAAAAGGACGAAGAAAATATTGAAAAAGTTAAAATTTTGAATCAAGTGACTTCTGAAAGAGATGTTGAATTGTTGCCGTATTTACAACCTTCAAGTATGGTTGCAAGTTCATCTGCAGCGCCAACTGAAAAGGGGGAAAATCCAATTGGACTAATGCATATAATGCGTGAAATTGAAAATGATCCGCATATTAATGACAATCCTTATACAGAAAGAGAACCTAGACATAAAAGTGCTACAAAGGAAAAAGAGCCACATACTAATACACAAATTTTTAAGTATGCGTATGCTCAACTTGAAAAAGAGAAGGCTCAGCAAAAACAAAACAAGAACCTTACCTTCTCGGGAGTATTAAAAATGGCTACAAATACTGAGAAAATGAAAAGACCTTTTATTGAGATTTCTTTCAAAGATCTGACTCTCACACTTAAATCTCGAAACAAACATATATTGAGAAATGTTACGGGGAAAATCAAACCTGGCCGTATCACTGCTGTCATGGGTCCGTCAGGGGCTGGCAAGACAACATTTCTTTCAGCTTTAGCTGGAAAGGCATTTGGATGCCTGGTTAATGGTTCAATTCTTATAAATGGAAGACAAGAATCAATTCATTCCTTTAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAACTTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGTTATCAGCTGATTTGTCAAAACCGGAAAAAGTTCTGGTTGTTGAAAGAGTTATCGAGTTCTTGGGGCTTCAATCTGTGCGGAATTCGGTAGTTGGAACAGTGGAAAAGAGAGGTATCTCTGGAGGCCAAAGAAAGCGAGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGCTAGATGAACCGACGTCTGGCCTGGACAGTGCATCATCTCAGCTCCTTCTACGAGCATTAAGACGTGAAGGTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCAACATGTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTCATGGTTTATCACGGATCTTCCAAGAAAGTTGAAGAATACTTTTCAGGTTTGGGGATCAATGTTCCGGAACGGATCAACCCTCCAGATTACTATATTGACATTTTGGAAGGCATAGCAGCACCTGATGGAAACTCGGGACTCCTTTATGAAGATCTGCCAGTTAAATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCAGCACAGTTTGATATGCCACAGAGTGTAAATCCAGCTAATGAATCGGGTGAAGTGGGAAAGACTTTTGCCGGAGAGTTATGGAATGATGTGAGAAACAACGTGCAACTGCGAGGGGAAAAGATAAGAGTTAACTTTTTAAAATCCAAGGATTTATCTGGCCGAAAAACTCCTGGTGTATTTAAGCAATATAAGTACTTTCTTATACGTGTTGGGAAGCAGAGATTACGAGAAGCTAGAATCCAGGCTGTAGATTATCTTATTTTGTTACTTGCTGGAGCTTGTTTAGGATCAATTACCAAATCGAGTGATCAAACGTTTGGCGCATCTGGTTACACCTATACGGTGATTGCAGTATCTCTTCTATGCAAAATAGCGGCGTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCCGGCATGAGTAGCTTGGCTTATTTTCTCTCGAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTATCTATGTTCTATTTCTTAACCAATCCAAGGTCTACTTTTGCAGATAATTATATTGTGTTGCTTTGTCTTGTATACTGTGTGACCGGCATAGCATACGCACTGTCCATAGTTTTTGAACCTGGCGCGGCTCAGCTGTGGTCAGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAATTTTAAAGGCTATAGCTAATTTGTGCTACTCTAAATGGGCTTTACAAGCATTGATCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGCTGCGGTTCACTTTTAAAAAGTGGCTATAATCTTCATGATTGGAGTCTTTGCATATCCATTCTCATTCTTATGGGTGTAATTGGTCGCGCAATAGCGTTTTTCTGTATGGTCACCTTTAAAAAGAAGTAA 3228 0.4015 MNDNDQINPAVLPLITQLVYSRISNLTSILSHQISADSNFCVKDPDSDWNQAFNFSSNLGFLESCIKKTKGDISNRLCTAAEVKFYLNSLMEKSTSANYLKPNKNCNLTSWVSGCEPGWACRVPPSSQKIDLRDSKEMPSRTSNCQACCEGFFCPHGLTCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMKPNHTCGGANTWADFSSSSETFCSAGSYCPTTTQKLPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANAHQKWKSAKDAAKKGASGLQAQLSRKFSRKKDEENIEKVKILNQVTSERDVELLPYLQPSSMVASSSAAPTEKGENPIGLMHIMREIENDPHINDNPYTEREPRHKSATKEKEPHTNTQIFKYAYAQLEKEKAQQKQNKNLTFSGVLKMATNTEKMKRPFIEISFKDLTLTLKSRNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVNGSILINGRQESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREGLEGVNICMVVHQPSYALFNMFDDLILLGKGGLMVYHGSSKKVEEYFSGLGINVPERINPPDYYIDILEGIAAPDGNSGLLYEDLPVKWMLHNGYPIPLDMRQHAAQFDMPQSVNPANESGEVGKTFAGELWNDVRNNVQLRGEKIRVNFLKSKDLSGRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFADNYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYSKWALQALIIANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTFKKK 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04985 1075 Gene3D - 471 708 IPR027417 -
Trre1g04985 1075 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 473 714 IPR003439 GO:0005524
Trre1g04985 1075 Pfam ABC-2 type transporter 671 1075 IPR043926 GO:0140359
Trre1g04985 1075 Pfam ABC transporter 490 642 IPR003439 GO:0005524
Trre1g04985 1075 CDD ABCG_EPDR 471 697 - -
Trre1g04985 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 695 IPR027417 -
Trre1g04985 1075 MobiDBLite consensus disorder prediction 401 426 - -
Trre1g04985 1075 SMART AAA_5 499 691 IPR003593 GO:0016887
Trre1g04985 1075 FunFam ABC transporter G family member 24 467 709 - -
Trre1g04985 1075 ProSitePatterns ABC transporters family signature. 614 628 IPR017871 GO:0005524|GO:0016887
Trre1g04985 1075 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 428 1062 - -
Trre1g04985 1075 MobiDBLite consensus disorder prediction 298 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04985 Trre-Chr1 55994307 56000432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04985 473 692 Calmodulin-binding Proteins AT2G36910 26.556 4.13e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04985 - - gmx:100775464 1802.72