Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04984 ATGTGTAGTTGGAGATTGTTTCTATGGTTTGTTTTAACATTGAGCTTCTTATTTGGGAAGAAGATGCATTGTCAAGATATGAATGACAATGACCAAATTAACCCTGCTGTTCTTCCTCTTATTACTCAGCTTGTTTATAGCAGAATTTCCAATTTGACTTCAATTCTTAGTCACCAAATTAGTGCTGACTCCAATTTCTGTGTCAAAGATCCGGATTCTGATTGGAATCAAGCCTTTAATTTTTCATCAAATTTGGGCTTCTTGGAATCTTGCATTAAAAAGACAAAAGGAGATATTTCAAACCGCTTGTGTACAGCCGCAGAAGTAAAGTTTTACTTAAATAGTTTAATGGAGAAATCCACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTTTCTGGTTGTGAGCCCGGATGGGCATGTCGTGTTCCTCCCTCAAGCCAGAAGATTGACCTTAGAGATTCAAAGGAGATGCCTTCTAGAACTTCAAACTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCACGGTCTCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACGCTCAATAAAACAACTGGTGTATGTGAACCATATCTTTATCAACTACCTCCAATGAAGCCAAACCATACCTGCGGAGGAGCAAATACTTGGGCCGATTTCAGTAGCAGTAGTGAAACATTTTGCTCGGCAGGATCCTATTGTCCAACAACCACCCAAAAATTGCCTTGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACATCCGAGAAAAGATGTTTCAAACTGAGTTCATGTAATTCAAATACAGCAACCCAAAACATGCATGCATATGGAATTATGCTCATTGCAGCTTTGAGTACATTGCTACTCATTATTTACAACTGTTCCGACCAAGTTCTCACTACTAGGGAAAGGAGAGTGGCAAAATCAAGAGAAGCAGCGGCTAGAAGTGCAAGGAAAACTGCAAATGCACACCAAAAATGGAAATCTGCAAAAGATGCTGCTAAGAAGGGTGCATCTGGGCTGCAAGCTCAGTTATCACGCAAATTCTCTCGTAAAAAGGACGAAGAAAATATTGAAAAAGTTAAAATTTTGAATCAAGTGACTTCTGAAAGAGATGTTGAATTGTTGCCGTATTTACAACCTTCAAGTATGGTTGCAAGTTCATCTGCAGCGCCAACTGAAAAGGGGGAAAATCCAATTGGACTAATGCATATAATGCGTGAAATTGAAAATGATCCGCATATTAATGACAATCCTTATACAGAAAGAGAACCTAGACATAAAAGTGCTACAAAGGAAAAAGAGCCACATACTAATACACAAATTTTTAAGTATGCGTATGCTCAACTTGAAAAAGAGAAGGCTCAGCAAAAACAAAACAAGAACCTTACCTTCTCGGGAGTATTAAAAATGGCTACAAATACTGAGAAAATGAAAAGACCTTTTATTGAGATTTCTTTCAAAGATCTGACTCTCACACTTAAATCTCGAAACAAACATATATTGAGAAATGTTACGGGGAAAATCAAACCTGGCCGTATCACTGCTGTCATGGGTCCGTCAGGGGCTGGCAAGACAACATTTCTTTCAGCTTTAGCTGGAAAGGCATTTGGATGCCTGGTTAATGGTTCAATTCTTATAAATGGAAGACAAGAATCAATTCATTCCTTTAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAACTTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGTTATCAGCTGATTTGTCAAAACCGGAAAAAGTTCTGGTTGTTGAAAGAGTTATCGAGTTCTTGGGGCTTCAATCTGTGCGGAATTCGGTAGTTGGAACAGTGGAAAAGAGAGGTATCTCTGGAGGCCAAAGAAAGCGAGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGCTAGATGAACCGACGTCTGGCCTGGACAGTGCATCATCTCAGCTCCTTCTACGAGCATTAAGACGTGAAGGTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCAACATGTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTCATGGTTTATCACGGATCTTCCAAGAAAGTTGAAGAATACTTTTCAGGTTTGGGGATCAATGTTCCGGAACGGATCAACCCTCCAGATTACTATATTGACATTTTGGAAGGCATAGCAGCACCTGATGGAAACTCGGGACTCCTTTATGAAGATCTGCCAGTTAAATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCAGCACAGTTTGATATGCCACAGAGTGTAAATCCAGCTAATGAATCGGGTGAAGTGGGAAAGACTTTTGCCGGAGAGTTATGGAATGATGTGAGAAACAACGTGCAACTGCGAGGGGAAAAGATAAGAGTTAACTTTTTAAAATCCAAGGATTTATCTGGCCGAAAAACTCCTGGTGTATTTAAGCAATATAAGTACTTTCTTATACGTGTTGGGAAGCAGAGATTACGAGAAGCTAGAATCCAGGCTGTAGATTATCTTATTTTGTTACTTGCTGGAGCTTGTTTAGGATCAATTACCAAATCGAGTGATCAAACGTTTGGCGCATCTGGTTACACCTATACGGTGATTGCAGTATCTCTTCTATGCAAAATAGCGGCGTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCCGGCATGAGTAGCTTGGCTTATTTTCTCTCGAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTATCTATGTTCTATTTCTTAACCAATCCAAGGTCTACTTTTGCAGATAATTATATTGTGTTGCTTTGTCTTGTATACTGTGTGACCGGCATAGCATACGCACTGTCCATAGTTTTTGAACCTGGCGCGGCTCAGCTGTGGTCAGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAATTTTAAAGGCTATAGCTAATTTGTGCTACTCTAAATGGGCTTTACAAGCATTGATCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGCTGCGGTTCACTTTTAAAAAGTGGCTATAATCTTCATGATTGGAGTCTTTGCATATCCATTCTCATTCTTATGGGTGTAATTGGTCGCGCAATAGCGTTTTTCTGTATGGTCACCTTTAAAAAGAAGTAA 3306 0.3999 MCSWRLFLWFVLTLSFLFGKKMHCQDMNDNDQINPAVLPLITQLVYSRISNLTSILSHQISADSNFCVKDPDSDWNQAFNFSSNLGFLESCIKKTKGDISNRLCTAAEVKFYLNSLMEKSTSANYLKPNKNCNLTSWVSGCEPGWACRVPPSSQKIDLRDSKEMPSRTSNCQACCEGFFCPHGLTCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMKPNHTCGGANTWADFSSSSETFCSAGSYCPTTTQKLPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANAHQKWKSAKDAAKKGASGLQAQLSRKFSRKKDEENIEKVKILNQVTSERDVELLPYLQPSSMVASSSAAPTEKGENPIGLMHIMREIENDPHINDNPYTEREPRHKSATKEKEPHTNTQIFKYAYAQLEKEKAQQKQNKNLTFSGVLKMATNTEKMKRPFIEISFKDLTLTLKSRNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVNGSILINGRQESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREGLEGVNICMVVHQPSYALFNMFDDLILLGKGGLMVYHGSSKKVEEYFSGLGINVPERINPPDYYIDILEGIAAPDGNSGLLYEDLPVKWMLHNGYPIPLDMRQHAAQFDMPQSVNPANESGEVGKTFAGELWNDVRNNVQLRGEKIRVNFLKSKDLSGRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFADNYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYSKWALQALIIANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTFKKK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04984 1101 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 454 1088 - -
Trre1g04984 1101 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 740 IPR003439 GO:0005524
Trre1g04984 1101 FunFam ABC transporter G family member 24 493 735 - -
Trre1g04984 1101 CDD ABCG_EPDR 497 723 - -
Trre1g04984 1101 ProSitePatterns ABC transporters family signature. 640 654 IPR017871 GO:0005524|GO:0016887
Trre1g04984 1101 MobiDBLite consensus disorder prediction 427 452 - -
Trre1g04984 1101 SMART AAA_5 525 717 IPR003593 GO:0016887
Trre1g04984 1101 Gene3D - 497 734 IPR027417 -
Trre1g04984 1101 MobiDBLite consensus disorder prediction 324 366 - -
Trre1g04984 1101 Pfam ABC-2 type transporter 697 1101 IPR043926 GO:0140359
Trre1g04984 1101 Pfam ABC transporter 516 668 IPR003439 GO:0005524
Trre1g04984 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 721 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04984 Trre-Chr1 55994229 56000432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04984 499 718 Calmodulin-binding Proteins AT2G36910 26.556 3.51e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04984 - - gmx:100775464 1812.73