Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04972 ATGACATGTAATTTGTCTTGCATTCTCTTCATAGAGAATTCTTACACTGCAGATGATGAAAGATGGTTTTTCTTAACTAGCATTTTTACGTATGCATTGACTATATCTCCGGTGGCAATGAGTCTCGAAGAGTTGATACCTGCAAACCATGCAAAGTCTTTTCTATTTTCCATTTTCATCAGAACAGGCCTTGTATTTTCTACCCTTGTTATTGGTCTCTCAGTTCCCTTTTTCGGTTTGGTGATGTCCTTAATTGGATCTTTACTTACAATGCTTGTAACTTTGATATTACCATGTGTTTGTTACCTAAGAATCTTGCGGGGCAAGGTAACGCGATTACAGGCAGGACTTTGCACCGGAATTATTATAGTAGGAGTTGTGTGTTCTTCGGTTGGAACGTACTCAGCCCTCGCCGAGATTGTTAAGAGTTTGAGTGGATGA 441 0.3946 MTCNLSCILFIENSYTADDERWFFLTSIFTYALTISPVAMSLEELIPANHAKSFLFSIFIRTGLVFSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCVCYLRILRGKVTRLQAGLCTGIIIVGVVCSSVGTYSALAEIVKSLSG 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04972 146 Pfam Transmembrane amino acid transporter protein 24 134 IPR013057 -
Trre1g04972 146 PANTHER OS05G0424000 PROTEIN-RELATED 24 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04972 Trre-Chr1 55941208 55941932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04972 11 145 Amino Acid or Auxin Permease AAAP Family AT5G02180 48.276 2.00e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04972 K15015 - gmx:100775840 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04972 1 55941208 55941932 Trre1g04972 1 55941208 55941932 ECH