Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04971 ATGAATAACTCAGTAGTTTCAGAGAACAGTTTTATTATTGAAAGTGATGAAGAAGATGATAAGGATTTTAACAATGGTGATGATGGAAATGATTCTGATTCTTCAAATTACTCCAATGAAAATCCACCACAAAGGATACAAAGTTCTTACAACCCTTCATGGCCTCAAAGTTACAGGCAATCTATTGATCTATACAGTAGTGTACCATCACCAAATATTGGATTTCTAGGAACTTCTTCATTGTCAAGATTAAGTAGTTCCTTCCTTTCTACATCTTTAACAAGGAGGCACACTCCGGAAACTCTTCCTTCGGTTACAAAACCTCTGATACAGACAGTAGAAGATGAGCCGCCACACAAACGCAGCTCTCACGCCTTGCTTCCTCCCCTTTCTAGAAGGTCTTCTTTGCTTAAGAAAGAATCCAAGGTTTGTCATGAAGTTCCTTCTCGACACTGCTCTTACGGACAGGCCGTGCTTAATGGCATAAATGTTCTTTGTGGAGTAGGAATCCTTTCAACTCCTTATGCTGCTAAAGAAGGTGGATGGGTTGGACTTTCCATTTTGTTTATTTTCGGAATCATTTCCTTTTATACCGGATTGCTCTTGCGTTCTTGTTTGGACAGTGAACCTGGCCTTGAAACATACCCTGACATTGGCCAAGCTGCTTTTGGTACTACCGGACGTATCGCTATTTCAATAGTATTGTACGTCGAATTATATGGCTGTTGCATAGAATATATAATTTTGGAGGGAGACAATTTGGCGTCCTTGTTTCCAAACGCATACTTAAATTTAGGTGGAATTGAGTTGAGTCCACAAACGCTCTTTGCTATAGTTGCTGCCTTGGCAGTTCTTCCTACAGTTATGCTCCGTGACCTAAGCATTCTTAGTTATATCTCAGCTGGTGGAGTTATCGCATCAGTTTTAGTGGTTCTGTGCTTGTTATGGATCGGTGTAGAAGATGTTGGCTTTCAACGCTCAGGGACAACACTCAATCTTGCAACTCTTCCTGTAGCTATTGGTCTTTACGGTTACTGTTATTCTGGACATGCCGTGTTCCCAAATATTTATACTTCCATGGCAAATCCAAACCAATTCCCTGCAGTACTAGTAGCATGTTTCGGAGTTTGTACCTTACTATATGCTGGCGGTGCTTTTATGGGATACAAAATGTTTGGAGACGATACTCTCTCTCAATTCACTCTTAACCTGCCGCAAGACTTGGTTGCAACCAAGATTGCTGTCTGGACTACGGTGGTTAATCCATTTACCAAATATCCTTTATATGCATACATAGAGATGGAAAAAAATTATTCATCTTAA 1323 0.4029 MNNSVVSENSFIIESDEEDDKDFNNGDDGNDSDSSNYSNENPPQRIQSSYNPSWPQSYRQSIDLYSSVPSPNIGFLGTSSLSRLSSSFLSTSLTRRHTPETLPSVTKPLIQTVEDEPPHKRSSHALLPPLSRRSSLLKKESKVCHEVPSRHCSYGQAVLNGINVLCGVGILSTPYAAKEGGWVGLSILFIFGIISFYTGLLLRSCLDSEPGLETYPDIGQAAFGTTGRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGGIELSPQTLFAIVAALAVLPTVMLRDLSILSYISAGGVIASVLVVLCLLWIGVEDVGFQRSGTTLNLATLPVAIGLYGYCYSGHAVFPNIYTSMANPNQFPAVLVACFGVCTLLYAGGAFMGYKMFGDDTLSQFTLNLPQDLVATKIAVWTTVVNPFTKYPLYAYIEMEKNYSS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04971 440 PANTHER OS05G0424000 PROTEIN-RELATED 161 433 - -
Trre1g04971 440 MobiDBLite consensus disorder prediction 12 26 - -
Trre1g04971 440 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g04971 440 MobiDBLite consensus disorder prediction 29 54 - -
Trre1g04971 440 Pfam Transmembrane amino acid transporter protein 153 431 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04971 Trre-Chr1 55938128 55941069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04971 3 428 Amino Acid or Auxin Permease AAAP Family AT2G39130 70.872 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04971 K15015 - gmx:100775840 653.669