Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04966 ATGGCCGGGAAGGTGGCGAAGGCAGCTTACGACGCAAAGATGGGGAAGCTTCTTCGAGAGTACACACAAGTGTTGGTGGTTTCATCAGACAATGTTGGATCAAACCAGCTTCAGGGTATAAGAAGGGCACTGCATGAAGATTCAGTGGTAGTGATGGGGAAAAACTCATTGATGAAACGATCTATCATTCAAGAAGCGGAGAAAACCGGAAACAACAATGCTTTCCTTAATCTTGTTCCACTCCTTGTGGGTAATGTTGCATTGATTTTTACCAAAGGTGACTTGAGGGATGTTAGTGAAAGGATTGCCAAGCTCAAGGTTGTTAATCCTATTCTCATGTGCCCTAAGTACAGATCATATGACTCATACAAAACTTGTTCCTATATGCAATCCGGACAGTTGCCATTGGGCCTCACATGTTGTAACCAACAATCTTCAGAAGCTTCTGAGCCTTTTCTTGTAAGTTCAAAATTCTCGCCACCCGAGCACTGTTACTTGATGAGATCAAGGCAGTTCTTGATGACAAGTATATGGTCTCCTTTTCTCCTTTTGGCTGGTAACTTGTGA 567 0.4321 MAGKVAKAAYDAKMGKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSVVVMGKNSLMKRSIIQEAEKTGNNNAFLNLVPLLVGNVALIFTKGDLRDVSERIAKLKVVNPILMCPKYRSYDSYKTCSYMQSGQLPLGLTCCNQQSSEASEPFLVSSKFSPPEHCYLMRSRQFLMTSIWSPFLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04966 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Trre1g04966 188 SUPERFAMILY Ribosomal protein L10-like 7 107 IPR043141 -
Trre1g04966 188 Gene3D - 3 122 IPR043141 -
Trre1g04966 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04966 Trre-Chr1 55831187 55831753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04966 1 151 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 48.485 9.56e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04966 K02941 - jre:108980032 143.28