Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04963 ATGGGTGGGAGCGAGAATTCAAAGGCTATGGTTGTGGGTCATTTGGCTGATTCCATCAGAGAGATTTCTGGGTTGTCAGAATGTCAAAATGTTTGCAAGAAGATGTATGGGAATTTGATTCGTAGGGTAAAGCTTTTGAGTCCTTTGTTTGAGGAATTGAAAGACTGTGATGAGTCTCTTAGTGATGAACATCTTCAAGCTTTTGAATCTTTAAGGGTTGCTTTGGATTTGACTATGATCCTTCTTAAGTCTGTTAACCATGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGACGCAGCTGATAAGTTCCAACAAATAACTGAAAAAATTGAAGCGGCGTTGAGTGATATTTCTTACAACAAACTCGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTTCATGCTCAGTTCAAAAGAGCCAAAGCTCAATCAGAATTTTCTGATTTACAACTAGACTTAGATATAGCAGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTATTCTCAAAAGACTTTCCGAGAAGTTGCATCTGAGGACTATAAATGATCTAAAGAAAGAATCTAGTGAATTACACGAATTGGTCATAGCAAGTGATGGAGAACTAGGAGACAGTTTTGAAATGGTCTCATCCCTTCTTAGGAAACTGAAGGATTGCGTGCTCACAGAAAATCCCGAGGTTGCTTCCTATGAGAGTGAGCAAGTGTCAATTAAGCACCGGTCTCCCGTAATCCCAGATGACTTTCGATGTCCTATATCTCTCGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCGAAAACACAGCAAACACTTTTGCATACAGCCCTTACTCCTAACTATGTCTTGAAGAGTCTGATTGGGTTATGGTGTGAAAGCAATGGTGTTGAACTACCAAAGAAGCAAGGGAGCTGTAAAACAAAGAAATCTGGAACCAGTCTTTCAGATTGTGACAGAACCGCTATCAAAGCTTTATTAGATAAACTCACAAGTAACGATATTGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCCAAGAGGAATGCAGATAACAGAGTATGTATTGCCGAGGCAGGAGCAATACCGCTTCTCGTAGAGTTATTGTCTTCCCCAGATCCTCGAACTCAGGAGCATGCTGTTACCGCACTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAAAACGGCAGCATGGAAGCTAGAGAAAACGCAGCGGCAACTCTTTTCAGTTTATCCGTCCTAGACGAGAACAAAGTTGCGATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGCTACTTTGTGAAGGTACACCAAGAGGAAAAAAAGATGCTGCTACAGCAATATTTAATCTATGTATTTATCAGGGTAACAAAGCTAGAGCTGTAAAGGCCGGGATAGTTGCTGCATTGATACGGTTTATGAAGGATGCGGGGGGTGGGATGGTTGACGAAGCGCTAGCCATAATGGCAATCCTTGCAAGCCATCACGAAGGCAGGATAGCAATCAGCCAAGCCGAGCCAATCCCTATTTTAGTTGAGGTTATACGAACCGGATCACCGCGTAACCGGGAGAATGCTGCTGCTGTTTTGTGGTCAGTATGCACAGGAGATTTCCTGCAATTGAAACTAGCAAAGGAACATGGAGCAGTAGAAGCACTTCAAGGATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAGCTGCTACAGCGATTCGAAGGGGAGGATAGTATGCAAAATTCCTAG 1893 0.4263 MGGSENSKAMVVGHLADSIREISGLSECQNVCKKMYGNLIRRVKLLSPLFEELKDCDESLSDEHLQAFESLRVALDLTMILLKSVNHGSKLYQALRRNDAADKFQQITEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQSEFSDLQLDLDIAVAQKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVIASDGELGDSFEMVSSLLRKLKDCVLTENPEVASYESEQVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCESNGVELPKKQGSCKTKKSGTSLSDCDRTAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSPDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAALIRFMKDAGGGMVDEALAIMAILASHHEGRIAISQAEPIPILVEVIRTGSPRNRENAAAVLWSVCTGDFLQLKLAKEHGAVEALQGLSENGTDRAKRKAGSILELLQRFEGEDSMQNS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04963 630 FunFam RING-type E3 ubiquitin transferase 329 624 - -
Trre1g04963 630 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Trre1g04963 630 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Trre1g04963 630 PANTHER U BOX DOMAIN-CONTAINING 33 619 - -
Trre1g04963 630 Gene3D - 330 627 IPR011989 -
Trre1g04963 630 Gene3D - 9 121 IPR036537 GO:0007166
Trre1g04963 630 CDD RING-Ubox_PUB 248 300 IPR045210 -
Trre1g04963 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 320 IPR013083 -
Trre1g04963 630 SMART arm_5 497 537 IPR000225 GO:0005515
Trre1g04963 630 SMART arm_5 374 414 IPR000225 GO:0005515
Trre1g04963 630 SMART arm_5 415 455 IPR000225 GO:0005515
Trre1g04963 630 SMART arm_5 538 578 IPR000225 GO:0005515
Trre1g04963 630 SMART arm_5 456 496 IPR000225 GO:0005515
Trre1g04963 630 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Trre1g04963 630 SUPERFAMILY RING/U-box 245 322 - -
Trre1g04963 630 CDD MLKL_NTD 15 141 - -
Trre1g04963 630 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Trre1g04963 630 SUPERFAMILY ARM repeat 342 618 IPR016024 -
Trre1g04963 630 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Trre1g04963 630 Coils Coil 126 146 - -
Trre1g04963 630 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Trre1g04963 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Trre1g04963 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Trre1g04963 630 FunFam RING-type E3 ubiquitin transferase 247 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04963 Trre-Chr1 55815631 55818525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04963 431 626 U-box Gene Family AT3G54850 29.949 2.55e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04963 - - gmx:100777452 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04963 1 55815631 55818525 Trre1g04963 1 55815631 55818525 ECH