Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04943 ATGGCAACAAATAGATTTATATGTGAAGTTTGTAATAAAGGGTTTCAAAGGGAACAAAATCTTCAACTTCATAGAAGAGGACATAATCTTCCTTGGAAGCTAAAACAAAAATCTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGTGTTCATCATGAACCTTCAAGAGCTTTAGGAGATCTCACTGGGATTAAGAAGCATTACTCTCGTAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAATGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGCTTCATTACTCATAGAGCATTTTGTGATGCACTAGCACAAGAGAGTGCATTAAGACACCCTAACCCTTTTGGAAATACTCATCATTTGTATTCCACAACAAACACAAGCCATCACATGAGTTTAGGCCAAATTTCCCATCAATTACAAAATCATCAAAACCAAACTAATAACAACATTTTGCGCCTTGGAACATCATCATCATTATCATCAACACCAAAATTTGAACAACAATTAATCTCATCACAATCACAACAATCTTTAAATCATCACTCTTCATCATTTAGTCCATTCTTCATGAATGATATTCCAAATCAATCATCATTTGATCAAGAACACCAATTCACAAACAAACAACTTCATGGTCTAATGCAACTTCCTGATCTTCAAGGAAATAACACAAACAATAATGTTTTCAATCTTATGAATAATATTCATGATCATCATCATCAATTCAACAACCCTCTAATCTTTGATCAAAACATGTCTAGTGATCCTCACATTATGTCAGCAACAGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACAAATTCAACCAACAACAACAAAGGTAACACTAATACTTCTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATGATCATGACAACAATATTGATGAACTTCATGGATTAATAAACTCTATTGCAAATGGAAACACATCATCATCCATATTTGGCAATGATGATGAAAACAACCTTAATATGAGGTTTGGTGGATCTGATAAGTTAACTTTAGATTTTCTTGGTGTTGGTGGAATGGTTAGAAACATGAATAGTGGTGCTGGATTTTCACAACATGCTATGAATACTAGTATGGCTTCTTTGAATCATGGCCTAAAATCAGTTCAGTCAAGTCAAAGTCAAAGTCAACATTTTGGAAGCTCAAATTTCATGCAATGA 1290 0.3442 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESALRHPNPFGNTHHLYSTTNTSHHMSLGQISHQLQNHQNQTNNNILRLGTSSSLSSTPKFEQQLISSQSQQSLNHHSSSFSPFFMNDIPNQSSFDQEHQFTNKQLHGLMQLPDLQGNNTNNNVFNLMNNIHDHHHQFNNPLIFDQNMSSDPHIMSATALLQKASQIGSTNSTNNNKGNTNTSFGNRSSSMENDDHDNNIDELHGLINSIANGNTSSSIFGNDDENNLNMRFGGSDKLTLDFLGVGGMVRNMNSGAGFSQHAMNTSMASLNHGLKSVQSSQSQSQHFGSSNFMQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04943 429 MobiDBLite consensus disorder prediction 303 328 - -
Trre1g04943 429 MobiDBLite consensus disorder prediction 303 324 - -
Trre1g04943 429 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Trre1g04943 429 Gene3D Classic Zinc Finger 58 139 - -
Trre1g04943 429 MobiDBLite consensus disorder prediction 409 429 - -
Trre1g04943 429 FunFam Zinc finger protein MAGPIE 2 29 - -
Trre1g04943 429 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Trre1g04943 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Trre1g04943 429 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Trre1g04943 429 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Trre1g04943 429 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 400 IPR031140 -
Trre1g04943 429 SMART c2h2final6 6 28 IPR013087 -
Trre1g04943 429 SMART c2h2final6 82 102 IPR013087 -
Trre1g04943 429 SMART c2h2final6 47 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04943 Trre-Chr1 55601427 55604792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04943 1 388 C2H2 Transcription Factor Family AT2G02080 50.000 3.69e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g04943 zf-C2H2_jaz 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04943 K25870 - gmx:102663407 449.899