Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04941 ATGAGTGAAGAATGTGGTGGAAACACTATTGCTACATCTACTACACCATTAAATTGGTGGTATCTTCAAGCTTCAAATTCTCTTTCTTCTAATTGGAATGATGTTAATAAACATGCATGGAATAACCAAATAAATAATCCAAATTCTTCATCTTCTTGTGAGGATCAAGATATATCTGTTTCTTCAACATCATTCACTAATGCTTCCAATCATTCAAGTCTCACCGTTGAATCATCTCGAAGAGTATTTGTTGAGCCACATGCACCACCTTCCTCCAATGACTTCATGGCCGAACATGCTTCGGATAACCAACTTTGGAGTCATGTTCTATCAGGTGTTGGATCAAATGGAGAGTTACACAACAATCAAGAAATTGGAGAGAATTTCTTGGATGGACTTGCATCAAAAACCATGTTTGACCAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAGTTGGGAATATACCAATGGTTCAAATTCTTCATTCAACACAAGTTTTGAGAAGCACTTAAATGGATATAGTGAAGCTCTAATTGAGAATAATGAAAGGTTGACAAAATTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGCAGCCACTTTGATCCACAAACAAACAATAATATGTCAAATAATTTGAATAATTCTTCATCCAATATGGATAATCACTTTGAATCTGACCCTAATTGTCATTTCAAACAATTACCTTTTGGAGATTCCACATCATGTACTATTGGAGTAGGTAATAAAATGTTCCCTAATTTTCATGATCAAGACATGAATAAGGTTAAACAAGAATATCATCATCAAAATCATGCAAGTGAAGTGATGCAACAAGGACATGTATTTGGAAAATCATTTAATCCAAATGGTTATCTTGATGGTTTCAATAATAGACTTAATTCAATGGGAGACAACAATGGAAAATTTTACCAAGGGTTGCCAAATATTTCACCATGCACAAAAAATTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAAGGCCAATTCTTGGAATCCATGCACAAAAGGCTAGCATGAAATACTCAAACTTATCTGAGTTAAAGAAGCAAGGGCTTCAAACACCATCACATATGAGAAATAGTAATGGAAGAGGAGAGGGGACAACACGTGAAATAAAAAAGAAAAGATCCGAAGAATCATCAGAAGCAAGTTTGAAAAAACCTAAACAAGATACATCAACAACAAATTCATCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGACCCAAGGGGAAGCTATTTCGATAGAAAAGATAAGGAAGATGCAAAGATGGACCTTCGAAGCAGAGGTCTATGTTTAGTTCCAACTTCATGTACACCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTTTGTATAGGTAA 1599 0.3602 MSEECGGNTIATSTTPLNWWYLQASNSLSSNWNDVNKHAWNNQINNPNSSSSCEDQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWSHVLSGVGSNGELHNNQEIGENFLDGLASKTMFDQPACDYLKKLDTTSWEYTNGSNSSFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNNMSNNLNNSSSNMDNHFESDPNCHFKQLPFGDSTSCTIGVGNKMFPNFHDQDMNKVKQEYHHQNHASEVMQQGHVFGKSFNPNGYLDGFNNRLNSMGDNNGKFYQGLPNISPCTKNFSDVISFNSRFGRPILGIHAQKASMKYSNLSELKKQGLQTPSHMRNSNGRGEGTTREIKKKRSEESSEASLKKPKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGSYFDRKDKEDAKMDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04941 532 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 215 510 - -
Trre1g04941 532 MobiDBLite consensus disorder prediction 382 404 - -
Trre1g04941 532 MobiDBLite consensus disorder prediction 367 381 - -
Trre1g04941 532 MobiDBLite consensus disorder prediction 405 421 - -
Trre1g04941 532 CDD bHLH_AtbHLH_like 425 467 IPR045239 -
Trre1g04941 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 425 474 IPR036638 GO:0046983
Trre1g04941 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 410 459 IPR011598 GO:0046983
Trre1g04941 532 MobiDBLite consensus disorder prediction 367 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04941 Trre-Chr1 55585644 55590452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04941 45 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 30.120 2.21e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04941 - - tpra:123920059 1014.6