Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04940 ATGGCTAGGATTAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAAGGACCTTCTCGCATAAGTGCGGCATCTATTATATTTTACGCTTTGATTCTTGTCTTGGTTGGTTTTTTCCTTTTGGCTACATACAGACATTGGTCTAACAGGTCAAGGTTGCAATCAGAAAGTCACTTGACAGTAACTGATGAGGGTGACAATAGTTTTGTGGACTCGAAGAAATCTGATCTACCTGGATATGCTGTTTTAAATACCTCTAAAGGGTCTATAATAGTAGAACTTTACAAGGAAAGTGCCCCTGAAGCTGTTGATGAATTTATTGACTTATGTCAAAAAGGACACTTCAAAGGGATGCTTTTTAAACGCGTAATCAAGCATTACGTTATTCAGGCAGGGGATGGCCAGGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTGCAAGTATGAAACACGAAGCGTTCATGCTTGGAACATCCAAGGGAAAACACACCAACAAAGGATTTGATCTTTTCATTACAACTGCACCGATACCAGATCTTAACGAGAAACTCATTGTGTTTGGGCAAGTCATCAAAGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACTGATGAACATTACACTCCTAAAATATCTATCGGGATACTTGATGTGACTCTGGAACTAAAGATCTACACCAAAAGGGGTATTCTATTTATATACTGA 723 0.3983 MARIKPQALLQQSKRKKGPSRISAASIIFYALILVLVGFFLLATYRHWSNRSRLQSESHLTVTDEGDNSFVDSKKSDLPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFKRVIKHYVIQAGDGQGTGAADWNLRGKQPASMKHEAFMLGTSKGKHTNKGFDLFITTAPIPDLNEKLIVFGQVIKGEDVVQEIEEVDTDEHYTPKISIGILDVTLELKIYTKRGILFIY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04940 240 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Trre1g04940 240 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Trre1g04940 240 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Trre1g04940 240 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Trre1g04940 240 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Trre1g04940 240 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 78 226 IPR002130 GO:0000413|GO:0003755
Trre1g04940 240 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 226 - -
Trre1g04940 240 CDD cyclophilin 83 223 - -
Trre1g04940 240 Gene3D - 67 234 IPR029000 -
Trre1g04940 240 SUPERFAMILY Cyclophilin-like 78 227 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04940 Trre-Chr1 55538793 55543639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04940 80 232 U-box Gene Family AT5G67530 32.500 1.09e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04940 - - gmx:100781538 389.037