Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04934 ATGCCCCCTGAGCAAGAAACAGCTATTAATGCACCAAATAGCATTTCACCTAACACAAACAGAACAGAGAACATCTCCATCAATGGTGAGCAAGAAGGTTCTTCTTCTAATAAAGTTAAACCTAGTTTGGATATTGATCATAACTCCATTAATATTCCTTCTCATCCACCTACACCAAGAACATCATTTTCCATTCTTCCTCAATCCTTGCGTCCAATTACCATCAAATTTGAAGATGTTTCATACAGCATAACCTTAACAAACCAGAAGAAGAAAAATGGTTGCGTTTTGGGAAAAGAATCAAAAGTAACAAGAAAAATACTCAATGGAGTCACCGGAATAGCAAAACCCGGCGAGTTAACGGCAATGCTGGGTCCATCAGGAAGTGGTAAAACCACCCTATTAACAGCCTTAGCCGGAAGAATAACCGGAAAAGTCACCGGAACAATAACATACAATGGAAACTCAGACTCATCCTACATTAAACGCAAAATAGGTTTTGTTTCTCAAGACGACGTTGTTTACCCTCACTTAACGGTGTTAGAAACATTAACCTACACTGCTCTATTAAGACTTCCCAAAACACTCACCCAAGGAGAGAAAATCGAACACGCAGAGAGGATGATTACGGAATTAGGCCTCACGCGTTGTCGAAATTCTCCTGTGGGTGGGTGTATGGGACTTTTCCGGGGAATCTCCGGCGGAGAAAGGAAAAGGATGAGTATTGGACAAGAAATGTTGGTGAACCCGAGTTTATTGTTGTTGGATGAACCGACTTCCGGTTTGGACTCGACCATGGCTCAAGTTATTGTTTCGGTTCTTAAGGGATTGGCTCGGTCCGGTCGAACCGTTGTTACTACTATTCATCAACCTTCAAGCCGGTTGTATAGGATGTTTGATAAAGTTGTGGTTTTGTCTGATGGGTACCCGATTTATAGTGGTAATGCGGGTCGGGTTATGGATTATCTTGGATCTGTTGGGTTTGTTCCGGGTTTTAACTTTGTTAATCCTGCTGATTTTCTCCTTGACCTTGCTAATGGCATAGTTGCTGATGTGAAACATGATGATGTTGAGATAGAGAAGCATGATCAAGATCAAGCTTCAGTGAAACAGTCACTAATTTCATCCTATAAGAAAAACTTATACCCTGCTCTTAAAGAAGATATTCACCAAAATAACACTGAACCACTTGTTTTTCCATCAAGAGGAACATCAAGACGTTCTTCTGATAACCAATGGAACACTAGCTGGTGGGAACAATTCAAGGTTCTGCTTAAGAGGGGTTTACAAGAAAGGAGACATGAATCTTTTTCTGGCTTAAAGATTTTCCAAGTCTTGTCTGTATCCATTCTTTCTGGACTCCTTTGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTAGGACTACTATTCTTCTTCTCCATCTTTTGGGGATTCTTCCCTCTCTTTAATGCAATCTTTGCATTTCCACTGGATAGACCAATGCTAAAAAAAGAAAGATCATCAGGCATGTACCATCTATCCTCCTACTATGTTGCTAGGATGGTAGGAGACTTACCAATGGAGCTTGTTCTTCCTACAATCTTTGTAACTATAACCTATTGGATGGGTGGTCTTAAACCTTCTTTGGTTACCTTTGTGTTAACCCTTTTAATCATGCTTTTCAATGTTCTAGTCTCTCAAGGAATAGGCCTAGCACTTGGTGCAATTCTAATGGATGTTAAACAAGCCACAACTCTAGCTTCAGTGACAATGTTGGTTTTTCTTTTAGCTGGTGGATACTACATTCAGAAAATGCCTTCTTTTATAGCTTGGCTTAAGTACTTTTCTTTCAGTCACTACTGTTATAAGTTGCTTGTAGGGGTGCAGTATTCAGTAAATGAGGTGTATGAGTGTAGACAAGGGTTGCATTGTAGGGTAAGAGATTTTCCAGCCATAAAGTGTTTGGAGATTGGTAATATGTGGGGAGATGTGGCTGCATTGACTGTAATGTTTGTTGGATATAGAGTTGTTGCATATTTAGCTTTAAGGATGGGACAGCCTAAATGCCTAAGGACTTAA 2064 0.4031 MPPEQETAINAPNSISPNTNRTENISINGEQEGSSSNKVKPSLDIDHNSINIPSHPPTPRTSFSILPQSLRPITIKFEDVSYSITLTNQKKKNGCVLGKESKVTRKILNGVTGIAKPGELTAMLGPSGSGKTTLLTALAGRITGKVTGTITYNGNSDSSYIKRKIGFVSQDDVVYPHLTVLETLTYTALLRLPKTLTQGEKIEHAERMITELGLTRCRNSPVGGCMGLFRGISGGERKRMSIGQEMLVNPSLLLLDEPTSGLDSTMAQVIVSVLKGLARSGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGNAGRVMDYLGSVGFVPGFNFVNPADFLLDLANGIVADVKHDDVEIEKHDQDQASVKQSLISSYKKNLYPALKEDIHQNNTEPLVFPSRGTSRRSSDNQWNTSWWEQFKVLLKRGLQERRHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLKKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFSFSHYCYKLLVGVQYSVNEVYECRQGLHCRVRDFPAIKCLEIGNMWGDVAALTVMFVGYRVVAYLALRMGQPKCLRT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04934 687 Pfam ABC-2 type transporter 289 360 IPR043926 GO:0140359
Trre1g04934 687 CDD ABCG_EPDR 72 314 - -
Trre1g04934 687 Gene3D - 68 326 IPR027417 -
Trre1g04934 687 Pfam ABC-2 type transporter 419 625 IPR013525 GO:0016020|GO:0140359
Trre1g04934 687 FunFam ABC transporter G family member 22 95 326 - -
Trre1g04934 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 326 IPR027417 -
Trre1g04934 687 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 332 IPR003439 GO:0005524
Trre1g04934 687 MobiDBLite consensus disorder prediction 7 63 - -
Trre1g04934 687 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 674 - -
Trre1g04934 687 MobiDBLite consensus disorder prediction 1 63 - -
Trre1g04934 687 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524|GO:0016887
Trre1g04934 687 SMART AAA_5 117 310 IPR003593 GO:0016887
Trre1g04934 687 Pfam ABC transporter 109 260 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04934 Trre-Chr1 55490262 55494423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04934 106 308 Calmodulin-binding Proteins AT2G36910 29.630 2.87e-13 71.6