LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g04910	ATGTCAACGCGGAGATCAAGAGTATCGTGGTTGGTCGATAAGAAAACAATTGCAACGAGAATTAAGTATGCATCAACAGAAACCGCTGAAGTTCAATTCGAAAGCAACCCTTGCATATCTTGCCCGAATTGTCAACATGTTATTGACAATAACAATTTAAAACAACAGTTTCCTGGATTACCAAAAGGTGTTAAATTTGATCCATCAGATCAAGACATAATGTCACATTTGCTCGCGAAAGTTGGTGCAGGAGATTCCGAACCACACCCTTTCATCGACGAATTTATCATTACAATAGAAGAGGATGGTGGTATTTGTTATACTCATCCTCAACATTTACCAGGTGTTTCACAAGATGGAAGTGTTGCACATTTTTTCCACAAAGCCATAAAAGCATATAACTCTGGAGGCCGTAAGCGTAGAAGATTATTTCTCCAAGATTTCGGAGATCTTCGCTGGCATAAAACTGGGAAAACTCGACCGATCTTCGTGGACGGAATCCAAAGAGGCTGCAAGAAGATCATGGTTCTATACATGACACCAACTAATGGAGGAAATGCTGAGAAGACAAATTGGGTTGTCCACCAATATCACATTGGAAGAGAAGAGGATGAGAAGGAGGGAGAGTATGTAATCTCAAAAATATTTTACCAGCAACAAGTGAAATTAGGTAAAAAAAATGATCAAGATGTTCCTGAAAATAGTGAAGCAAGTATTGCAAGAGTTGTTGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCATTGTAACAAAAAACAATGCTCAGATATGAATCAAGAACAAGAATCTCAACAAAGTATTTCTCAGATTTTACCAAATATTACTCATCGATGGCTACTTGATAGTGAGGGTGACCATGGAGAATGCTCACATATGAACCAAGAACAAGAATCTCATCACATGAATCAAGAACAAGAACCTCAGCATTTTTCTCAGATTTTACCAAATCTTCAATGGTTACTTGATAATCAGGATGACTATGAAGAGCTTCCAAACATTGACCTGTCGATGGTTGAATCTCAAAATATTGAAGGGATTAATGACGTTGACCTATCTTTGAATCTATATAGTTCACAACAATTTGAAGAAGAATCTCCCTTTTTGTTTGATTACCTTCAAAATCAGTCTCCTAAAAGGAATGTGGAAGAAAGACAACAAATGGAACAACCTAGTCTTTCTGGATTTGCTCATCTAGGAGCGGAGGAGCAATCGAAGAAAGATTCCAGAGAGGGTCAAAATCCTCACCTTGACACTAGGAAGAACAATGTCGGAGAGTGTCAAAATTCAGACCGTGGCACTGGAAATGTTGAACTTAACCCTCAATCGTCCGATTTCCATTTAAGTCAGCTGGACTTTAGCTCACAAGACAGCTACATTGCTTGGGGTGGTAGCATTAGCAAGACATTCAAGTAA	1437	0.3855	MSTRRSRVSWLVDKKTIATRIKYASTETAEVQFESNPCISCPNCQHVIDNNNLKQQFPGLPKGVKFDPSDQDIMSHLLAKVGAGDSEPHPFIDEFIITIEEDGGICYTHPQHLPGVSQDGSVAHFFHKAIKAYNSGGRKRRRLFLQDFGDLRWHKTGKTRPIFVDGIQRGCKKIMVLYMTPTNGGNAEKTNWVVHQYHIGREEDEKEGEYVISKIFYQQQVKLGKKNDQDVPENSEASIARVVDPVTPNFVTPELHCNKKQCSDMNQEQESQQSISQILPNITHRWLLDSEGDHGECSHMNQEQESHHMNQEQEPQHFSQILPNLQWLLDNQDDYEELPNIDLSMVESQNIEGINDVDLSLNLYSSQQFEEESPFLFDYLQNQSPKRNVEERQQMEQPSLSGFAHLGAEEQSKKDSREGQNPHLDTRKNNVGECQNSDRGTGNVELNPQSSDFHLSQLDFSSQDSYIAWGGSISKTFK	478

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre1g04910	478	SUPERFAMILY	NAC domain	45	218	IPR036093	GO:0003677\|GO:0006355
Trre1g04910	478	MobiDBLite	consensus disorder prediction	425	450	-	-
Trre1g04910	478	FunFam	NAC domain-containing protein 8	69	222	-	-
Trre1g04910	478	MobiDBLite	consensus disorder prediction	408	450	-	-
Trre1g04910	478	ProSiteProfiles	NAC domain profile.	60	218	IPR003441	GO:0003677\|GO:0006355
Trre1g04910	478	Gene3D	NAC domain	69	222	IPR036093	GO:0003677\|GO:0006355
Trre1g04910	478	MobiDBLite	consensus disorder prediction	408	424	-	-
Trre1g04910	478	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	9	314	IPR044799	GO:0003700
Trre1g04910	478	Pfam	No apical meristem (NAM) protein	61	199	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g04910	Trre-Chr1	55175164	55180178	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g04910	36	220	NAC Transcription Factor Family	AT1G28470	52.880	2.95e-65	211

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Trre1g04910		NAM	3.5e-17	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g04910	-		-	mtr:11406966	499.975

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