Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04910 ATGTCAACGCGGAGATCAAGAGTATCGTGGTTGGTCGATAAGAAAACAATTGCAACGAGAATTAAGTATGCATCAACAGAAACCGCTGAAGTTCAATTCGAAAGCAACCCTTGCATATCTTGCCCGAATTGTCAACATGTTATTGACAATAACAATTTAAAACAACAGTTTCCTGGATTACCAAAAGGTGTTAAATTTGATCCATCAGATCAAGACATAATGTCACATTTGCTCGCGAAAGTTGGTGCAGGAGATTCCGAACCACACCCTTTCATCGACGAATTTATCATTACAATAGAAGAGGATGGTGGTATTTGTTATACTCATCCTCAACATTTACCAGGTGTTTCACAAGATGGAAGTGTTGCACATTTTTTCCACAAAGCCATAAAAGCATATAACTCTGGAGGCCGTAAGCGTAGAAGATTATTTCTCCAAGATTTCGGAGATCTTCGCTGGCATAAAACTGGGAAAACTCGACCGATCTTCGTGGACGGAATCCAAAGAGGCTGCAAGAAGATCATGGTTCTATACATGACACCAACTAATGGAGGAAATGCTGAGAAGACAAATTGGGTTGTCCACCAATATCACATTGGAAGAGAAGAGGATGAGAAGGAGGGAGAGTATGTAATCTCAAAAATATTTTACCAGCAACAAGTGAAATTAGGTAAAAAAAATGATCAAGATGTTCCTGAAAATAGTGAAGCAAGTATTGCAAGAGTTGTTGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCATTGTAACAAAAAACAATGCTCAGATATGAATCAAGAACAAGAATCTCAACAAAGTATTTCTCAGATTTTACCAAATATTACTCATCGATGGCTACTTGATAGTGAGGGTGACCATGGAGAATGCTCACATATGAACCAAGAACAAGAATCTCATCACATGAATCAAGAACAAGAACCTCAGCATTTTTCTCAGATTTTACCAAATCTTCAATGGTTACTTGATAATCAGGATGACTATGAAGAGCTTCCAAACATTGACCTGTCGATGGTTGAATCTCAAAATATTGAAGGGATTAATGACGTTGACCTATCTTTGAATCTATATAGTTCACAACAATTTGAAGAAGAATCTCCCTTTTTGTTTGATTACCTTCAAAATCAGTCTCCTAAAAGGAATGTGGAAGAAAGACAACAAATGGAACAACCTAGTCTTTCTGGATTTGCTCATCTAGGAGCGGAGGAGCAATCGAAGAAAGATTCCAGAGAGGGTCAAAATCCTCACCTTGACACTAGGAAGAACAATGTCGGAGAGTGTCAAAATTCAGACCGTGGCACTGGAAATGTTGAACTTAACCCTCAATCGTCCGATTTCCATTTAAGTCAGCTGGACTTTAGCTCACAAGACAGCTACATTGCTTGGGGTGGTAGCATTAGCAAGACATTCAAGTAA 1437 0.3855 MSTRRSRVSWLVDKKTIATRIKYASTETAEVQFESNPCISCPNCQHVIDNNNLKQQFPGLPKGVKFDPSDQDIMSHLLAKVGAGDSEPHPFIDEFIITIEEDGGICYTHPQHLPGVSQDGSVAHFFHKAIKAYNSGGRKRRRLFLQDFGDLRWHKTGKTRPIFVDGIQRGCKKIMVLYMTPTNGGNAEKTNWVVHQYHIGREEDEKEGEYVISKIFYQQQVKLGKKNDQDVPENSEASIARVVDPVTPNFVTPELHCNKKQCSDMNQEQESQQSISQILPNITHRWLLDSEGDHGECSHMNQEQESHHMNQEQEPQHFSQILPNLQWLLDNQDDYEELPNIDLSMVESQNIEGINDVDLSLNLYSSQQFEEESPFLFDYLQNQSPKRNVEERQQMEQPSLSGFAHLGAEEQSKKDSREGQNPHLDTRKNNVGECQNSDRGTGNVELNPQSSDFHLSQLDFSSQDSYIAWGGSISKTFK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04910 478 SUPERFAMILY NAC domain 45 218 IPR036093 GO:0003677|GO:0006355
Trre1g04910 478 MobiDBLite consensus disorder prediction 425 450 - -
Trre1g04910 478 FunFam NAC domain-containing protein 8 69 222 - -
Trre1g04910 478 MobiDBLite consensus disorder prediction 408 450 - -
Trre1g04910 478 ProSiteProfiles NAC domain profile. 60 218 IPR003441 GO:0003677|GO:0006355
Trre1g04910 478 Gene3D NAC domain 69 222 IPR036093 GO:0003677|GO:0006355
Trre1g04910 478 MobiDBLite consensus disorder prediction 408 424 - -
Trre1g04910 478 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 314 IPR044799 GO:0003700
Trre1g04910 478 Pfam No apical meristem (NAM) protein 61 199 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04910 Trre-Chr1 55175164 55180178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04910 36 220 NAC Transcription Factor Family AT1G28470 52.880 2.95e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g04910 NAM 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04910 - - mtr:11406966 499.975