Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04909 ATGGCTGGAGTATCGTGGTTGGTCGATAAGAAAACAATTGCAACGAGAATTAAGTATGCATCAACAGAAACCGCTGAAGTTCAATTCGAAAGCAACCCTTGCATATCTTGCCCGAATTGTCAACATGTTATTGACAATAACAATTTAAAACAACAGTTTCCTGGATTACCAAAAGGTGTTAAATTTGATCCATCAGATCAAGACATAATGTCACATTTGCTCGCGAAAGTTGGTGCAGGAGATTCCGAACCACACCCTTTCATCGACGAATTTATCATTACAATAGAAGAGGATGGTGGTATTTGTTATACTCATCCTCAACATTTACCAGGTGTTTCACAAGATGGAAGTGTTGCACATTTTTTCCACAAAGCCATAAAAGCATATAACTCTGGAGGCCGTAAGCGTAGAAGATTATTTCTCCAAGATTTCGGAGATCTTCGCTGGCATAAAACTGGGAAAACTCGACCGATCTTCGTGGACGGAATCCAAAGAGGCTGCAAGAAGATCATGGTTCTATACATGACACCAACTAATGGAGGAAATGCTGAGAAGACAAATTGGGTTGTCCACCAATATCACATTGGAAGAGAAGAGGATGAGAAGGAGGGAGAGTATGTAATCTCAAAAATATTTTACCAGCAACAAGTGAAATTAGGTAAAAAAAATGATCAAGATGTTCCTGAAAATAGTGAAGCAAGTATTGCAAGAGTTGTTGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCATTGTAACAAAAAACAATGCTCAGATATGAATCAAGAACAAGAATCTCAACAAAGTATTTCTCAGATTTTACCAAATATTACTCATCGATGGCTACTTGATAGTGAGGGTGACCATGGAGAATGCTCACATATGAACCAAGAACAAGAATCTCATCACATGAATCAAGAACAAGAACCTCAGCATTTTTCTCAGATTTTACCAAATCTTCAATGGTTACTTGATAATCAGGATGACTATGAAGAGCTTCCAAACATTGACCTGTCGATGGTTGAATCTCAAAATATTGAAGGGATTAATGACGTTGACCTATCTTTGAATCTATATAGTTCACAACAATTTGAAGAAGAATCTCCCTTTTTGTTTGATTACCTTCAAAATCAGTCTCCTAAAAGGAATGTGGAAGAAAGACAACAAATGGAACAACCTAGTCTTTCTGGATTTGCTCATCTAGGAGCGGAGGAGCAATCGAAGAAAGATTCCAGAGAGGGTCAAAATCCTCACCTTGACACTAGGAAGAACAATGTCGGAGAGTGTCAAAATTCAGACCGTGGCACTGGAAATGTTGAACTTAACCCTCAATCGTCCGATTTCCATTTAAGTCAGCTGGACTTTAGCTCACAAGACAGCTACATTGCTTGGGGTGGTAGCATTAGCAAGACATTCAAGTAA 1425 0.3853 MAGVSWLVDKKTIATRIKYASTETAEVQFESNPCISCPNCQHVIDNNNLKQQFPGLPKGVKFDPSDQDIMSHLLAKVGAGDSEPHPFIDEFIITIEEDGGICYTHPQHLPGVSQDGSVAHFFHKAIKAYNSGGRKRRRLFLQDFGDLRWHKTGKTRPIFVDGIQRGCKKIMVLYMTPTNGGNAEKTNWVVHQYHIGREEDEKEGEYVISKIFYQQQVKLGKKNDQDVPENSEASIARVVDPVTPNFVTPELHCNKKQCSDMNQEQESQQSISQILPNITHRWLLDSEGDHGECSHMNQEQESHHMNQEQEPQHFSQILPNLQWLLDNQDDYEELPNIDLSMVESQNIEGINDVDLSLNLYSSQQFEEESPFLFDYLQNQSPKRNVEERQQMEQPSLSGFAHLGAEEQSKKDSREGQNPHLDTRKNNVGECQNSDRGTGNVELNPQSSDFHLSQLDFSSQDSYIAWGGSISKTFK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04909 474 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Trre1g04909 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 310 IPR044799 GO:0003700
Trre1g04909 474 MobiDBLite consensus disorder prediction 421 446 - -
Trre1g04909 474 MobiDBLite consensus disorder prediction 404 446 - -
Trre1g04909 474 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Trre1g04909 474 MobiDBLite consensus disorder prediction 404 420 - -
Trre1g04909 474 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Trre1g04909 474 Gene3D NAC domain 65 218 IPR036093 GO:0003677|GO:0006355
Trre1g04909 474 FunFam NAC domain-containing protein 8 65 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04909 Trre-Chr1 55175164 55180696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04909 32 216 NAC Transcription Factor Family AT1G28470 52.880 2.22e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g04909 NAM 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04909 - - mtr:11406966 501.901