Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g04904 | ATGCAAACTCATCATCATCATCAGTACTACTCATTATCTTGTGTTAGTACTAGTGAGTGTGTCTCTTGCAGCAGTTTAGAAGATGAAGATTCCATTTTCCTTTCTCTTGCCCCTCCTGGCCACCAACAATTACCACCTGCACCTCCTAAACTCTCATCCACTACTATCATCCCTCCTCCCCTTCAACAAAACACTATCTCACTCTCTCCTCTTCATGACCATACTTTTGCTCTAAATGTAGCACTTTCTTCCCCTCTCCTCCACACTTCCAAACCACCTCAATACTGGATCCCTTCTCCTTCTCAAATCCTTATTGGTCCAACCCAATTCTCTTGTTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCTGAATCTCTAAAAGGGTCAAAACCAACATCATCAACTTCATCAATGTTGAAACTACCCTGCTATTGTTGTGCTGAGGGATGCAAAAATAACATAAACTATCCAAGATCAAGACCATTGAAAGATTTCAGGACACTTCAAACACATTATAAGAGGAAACATGGAGGGAAATCATTTGAGTGCAGGAAGTGTAGGAAACCATTTGCTGTTAGAGGTGATTGGAGAACACATGAGAAAAATTGTGGCAAGCTTTGGTTCTGTATCTGTGGTTCTGATTTTAAACATAAAAGATCACTTAAAGATCATGTTCGTGCTTTTGGTAATGGCCATGCTCCACATACATTGGAATCTTTTAGCTTTGATCATGAATATAAAGCAAATGAAAATTTCAAGGAAGAAGAACAAAGTGGAAGTGAAGATGATCAAGATGAAGAAGATAATAACAGTGAAGTTGCATTTACTTTCAACTAA | 888 | 0.3896 | MQTHHHHQYYSLSCVSTSECVSCSSLEDEDSIFLSLAPPGHQQLPPAPPKLSSTTIIPPPLQQNTISLSPLHDHTFALNVALSSPLLHTSKPPQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGSKPTSSTSSMLKLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKSFECRKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESFSFDHEYKANENFKEEEQSGSEDDQDEEDNNSEVAFTFN | 295 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g04904 | 295 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 112 | 132 | IPR013087 | - | |
Trre1g04904 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 99 | 131 | IPR036236 | - | |
Trre1g04904 | 295 | SMART | c2h2final6 | 110 | 132 | IPR013087 | - | |
Trre1g04904 | 295 | SMART | c2h2final6 | 198 | 218 | IPR013087 | - | |
Trre1g04904 | 295 | SMART | c2h2final6 | 161 | 193 | IPR013087 | - | |
Trre1g04904 | 295 | FunFam | Zinc finger protein WIP2 | 167 | 249 | - | - | |
Trre1g04904 | 295 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 110 | 137 | IPR013087 | - | |
Trre1g04904 | 295 | PANTHER | ZINC FINGER PROTEIN WIP2 | 92 | 275 | IPR043584 | GO:0003700|GO:0010468 | |
Trre1g04904 | 295 | Gene3D | Classic Zinc Finger | 109 | 132 | - | - | |
Trre1g04904 | 295 | MobiDBLite | consensus disorder prediction | 268 | 295 | - | - | |
Trre1g04904 | 295 | MobiDBLite | consensus disorder prediction | 273 | 287 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g04904 | Trre-Chr1 | 55093094 | 55094274 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g04904 | 28 | 254 | C2H2 Transcription Factor Family | AT1G13290 | 68.776 | 3.62e-109 | 317 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre1g04904 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g04904 | - | - | mtr:25484895 | 426.787 |