Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04904 ATGCAAACTCATCATCATCATCAGTACTACTCATTATCTTGTGTTAGTACTAGTGAGTGTGTCTCTTGCAGCAGTTTAGAAGATGAAGATTCCATTTTCCTTTCTCTTGCCCCTCCTGGCCACCAACAATTACCACCTGCACCTCCTAAACTCTCATCCACTACTATCATCCCTCCTCCCCTTCAACAAAACACTATCTCACTCTCTCCTCTTCATGACCATACTTTTGCTCTAAATGTAGCACTTTCTTCCCCTCTCCTCCACACTTCCAAACCACCTCAATACTGGATCCCTTCTCCTTCTCAAATCCTTATTGGTCCAACCCAATTCTCTTGTTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCTGAATCTCTAAAAGGGTCAAAACCAACATCATCAACTTCATCAATGTTGAAACTACCCTGCTATTGTTGTGCTGAGGGATGCAAAAATAACATAAACTATCCAAGATCAAGACCATTGAAAGATTTCAGGACACTTCAAACACATTATAAGAGGAAACATGGAGGGAAATCATTTGAGTGCAGGAAGTGTAGGAAACCATTTGCTGTTAGAGGTGATTGGAGAACACATGAGAAAAATTGTGGCAAGCTTTGGTTCTGTATCTGTGGTTCTGATTTTAAACATAAAAGATCACTTAAAGATCATGTTCGTGCTTTTGGTAATGGCCATGCTCCACATACATTGGAATCTTTTAGCTTTGATCATGAATATAAAGCAAATGAAAATTTCAAGGAAGAAGAACAAAGTGGAAGTGAAGATGATCAAGATGAAGAAGATAATAACAGTGAAGTTGCATTTACTTTCAACTAA 888 0.3896 MQTHHHHQYYSLSCVSTSECVSCSSLEDEDSIFLSLAPPGHQQLPPAPPKLSSTTIIPPPLQQNTISLSPLHDHTFALNVALSSPLLHTSKPPQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGSKPTSSTSSMLKLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKSFECRKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESFSFDHEYKANENFKEEEQSGSEDDQDEEDNNSEVAFTFN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04904 295 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Trre1g04904 295 SUPERFAMILY beta-beta-alpha zinc fingers 99 131 IPR036236 -
Trre1g04904 295 SMART c2h2final6 110 132 IPR013087 -
Trre1g04904 295 SMART c2h2final6 198 218 IPR013087 -
Trre1g04904 295 SMART c2h2final6 161 193 IPR013087 -
Trre1g04904 295 FunFam Zinc finger protein WIP2 167 249 - -
Trre1g04904 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Trre1g04904 295 PANTHER ZINC FINGER PROTEIN WIP2 92 275 IPR043584 GO:0003700|GO:0010468
Trre1g04904 295 Gene3D Classic Zinc Finger 109 132 - -
Trre1g04904 295 MobiDBLite consensus disorder prediction 268 295 - -
Trre1g04904 295 MobiDBLite consensus disorder prediction 273 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04904 Trre-Chr1 55093094 55094274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04904 28 254 C2H2 Transcription Factor Family AT1G13290 68.776 3.62e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g04904 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04904 - - mtr:25484895 426.787