Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04902 ATGTTTTTTTCTACCCTCACAATGCAGCGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCTTTAGAAGAAGAACGACGTAAGATTCAAGTTTTCCCTAAAGAACTACCCCTTTCTTTAGAACTCGTTACACAAGCTATTGAAGCTTGTAGACAGCAATTATCTGGAACAACAACTGAGTATAATTTGAATGGACAACAATCTGAGTGTTCTGAACAGACAACCTCAACAGATGGACCTGTTTTGGAAGAGTTTATACCAATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTTTATGATGATGATGATAATGATGAAGAAGATGATGAACAACATTCTCATCATAAACAACAAAAGATTTCAATGGATGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCTCCTTCTCATGAGGATGTTACTAGGAAAGTAGTACTACCACCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCATTTCAAAAAGATGAAAGAGTTAACAATAATAATAAGACATGTGAATTGTTGAGTAAAGGACAACCCTCTTCGATCGGTGTAGCTGCTGCGAGTTCTAATGCGGCTACTGTTACCACCAGTAACAATGCTGGAAACTGTAAAAGAGATGAGAAAGAGGAAAAGAGAAAGCAGCGCCGATGCTGGTCGCAGGAGTTGCACAAGCGCTTCTTACAAGCACTTCAACAACTTGGAGGTGCAGATTCTGCAACACCAAAGCAAATTAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCATACAAGACGACCAAGTCCATCAAACAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGAAACATTTTTGTCCAACAACAAGAATATGGTGGGGTAGCATCATCAACAACATCAGGGGAAATGACAAAGGTTGTAGCACCTTCTGGAATCTATGCACCAGTCGCCACACATCCTCCTCCAGCCGCAACAATTAAGAAGCCAGAGTTTAAAAAGTTTGATCATTCAATCTCAGAAGAAAGAGCTAATAATAACAGTGAAGGTGCTGTTCATTCAAATTCACCTACATCATCATCTTCTACACATAATACTACCAATACTTCCCTTGGCTATTGA 1194 0.3911 MFFSTLTMQRFKMGFSDYIQALEEERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQQSECSEQTTSTDGPVLEEFIPIKKRASPYCEQVYDDDDNDEEDDEQHSHHKQQKISMDDKKKSDWLRSVQLWNPDPPSHEDVTRKVVLPPVLELKRNGSGGGAFHPFQKDERVNNNNKTCELLSKGQPSSIGVAAASSNAATVTTSNNAGNCKRDEKEEKRKQRRCWSQELHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPSNNESANSQTAAPFVLVGNIFVQQQEYGGVASSTTSGEMTKVVAPSGIYAPVATHPPPAATIKKPEFKKFDHSISEERANNNSEGAVHSNSPTSSSSTHNTTNTSLGY 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04902 397 MobiDBLite consensus disorder prediction 110 127 - -
Trre1g04902 397 MobiDBLite consensus disorder prediction 368 397 - -
Trre1g04902 397 MobiDBLite consensus disorder prediction 351 367 - -
Trre1g04902 397 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 283 IPR006447 GO:0003677
Trre1g04902 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 369 IPR044787 GO:0003700|GO:0006355
Trre1g04902 397 MobiDBLite consensus disorder prediction 208 228 - -
Trre1g04902 397 FunFam Myb family transcription factor 227 285 - -
Trre1g04902 397 SUPERFAMILY Homeodomain-like 226 286 IPR009057 -
Trre1g04902 397 Gene3D - 227 285 - -
Trre1g04902 397 Pfam Myb-like DNA-binding domain 230 281 IPR001005 -
Trre1g04902 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 285 IPR017930 -
Trre1g04902 397 MobiDBLite consensus disorder prediction 343 397 - -
Trre1g04902 397 MobiDBLite consensus disorder prediction 99 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04902 Trre-Chr1 55067741 55069600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04902 17 353 G2-like Transcription Factor Family AT1G68670 47.500 5.52e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g04902 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04902 - - aprc:113872943 473.011