Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04881 ATGTTCTTGTTCCCTGCTGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGTTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGATCATTATGCTCAAATTTTGACCAAAGTTTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCTTGGAAAAACAATTTTGGCTTTTGCTGTGAACTTGATGAGGATTGTGCAAATGACTTAGCTGGTGTTCCTGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAAGATTATGAAGGTAGAAACTTGGAAAATAGTTTGAATATGGCAAATTCTTCTGAAGCAAGTCAGGAAGTTTCGGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCCGAGAAAACCTTACGTTCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACCGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACTCCTCCAAGAACAAGATACAATAAGAGTCGAGCCAGACCATCTGCTTCATAA 654 0.3731 MFLFPAGNSKHWVVRMDKPVVGVVTKAQIVDHYAQILTKVLGNEKDAQMCIYHVSWKNNFGFCCELDEDCANDLAGVPGVLSVQPDNNFESENKDYEGRNLENSLNMANSSEASQEVSVKTKKLFVTGLSFYTSEKTLRSAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRTRYNKSRARPSAS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04881 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Trre1g04881 217 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 3 191 IPR039206 GO:0016554
Trre1g04881 217 SMART rrm1_1 123 196 IPR000504 GO:0003723
Trre1g04881 217 FunFam Organelle RRM domain-containing protein 1, chloroplastic 1 89 - -
Trre1g04881 217 Gene3D - 90 216 IPR012677 -
Trre1g04881 217 SUPERFAMILY RNA-binding domain, RBD 110 213 IPR035979 GO:0003676
Trre1g04881 217 FunFam Organelle RRM domain-containing protein 1, chloroplastic 90 217 - -
Trre1g04881 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 190 IPR000504 GO:0003723
Trre1g04881 217 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 5 89 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04881 Trre-Chr1 54916396 54918828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04881 114 214 C2H2 Transcription Factor Family AT2G19380 30.693 3.97e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04881 - - mtr:11405373 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04881 1 54916396 54918828 Trre1g04881 1 54916396 54918828 ECH