Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04880 ATGGAAGTAGTTCTGTCTCTTTCAGTTACATTCACCAAATTTCAAACCTTTCCCTCTCTCAAACCAAACAAAACCCCAATTCACCAAATTCCAATAAACACAACACTACCCAACAAAAAAAATCACTCTTTTTCTTGTCCCATTTCATCTAATCCTTCTTTTACTAGAATTTCAGCAACAAGTAACCAATCATCAACTTCACAAACCGATATGTTCTTGTTCCCTGCTGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGTTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGATCATTATGCTCAAATTTTGACCAAAGTTTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCTTGGAAAAACAATTTTGGCTTTTGCTGTGAACTTGATGAGGATTGTGCAAATGACTTAGCTGGTGTTCCTGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAAGATTATGAAGGTAGAAACTTGGAAAATAGTTTGAATATGGCAAATTCTTCTGAAGCAAGTCAGGAAGTTTCGGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCCGAGAAAACCTTACGTTCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACCGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACTCCTCCAAGAACAAGATACAATAAGAGTCGAGCCAGACCATCTGCTTCATAA 864 0.3669 MEVVLSLSVTFTKFQTFPSLKPNKTPIHQIPINTTLPNKKNHSFSCPISSNPSFTRISATSNQSSTSQTDMFLFPAGNSKHWVVRMDKPVVGVVTKAQIVDHYAQILTKVLGNEKDAQMCIYHVSWKNNFGFCCELDEDCANDLAGVPGVLSVQPDNNFESENKDYEGRNLENSLNMANSSEASQEVSVKTKKLFVTGLSFYTSEKTLRSAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRTRYNKSRARPSAS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04880 287 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 62 160 IPR037045 -
Trre1g04880 287 FunFam Organelle RRM domain-containing protein 1, chloroplastic 70 159 - -
Trre1g04880 287 SUPERFAMILY RNA-binding domain, RBD 180 283 IPR035979 GO:0003676
Trre1g04880 287 Gene3D - 161 286 IPR012677 -
Trre1g04880 287 FunFam Organelle RRM domain-containing protein 1, chloroplastic 160 287 - -
Trre1g04880 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Trre1g04880 287 SMART rrm1_1 193 266 IPR000504 GO:0003723
Trre1g04880 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Trre1g04880 287 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 22 261 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04880 Trre-Chr1 54916396 54919038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04880 184 284 C2H2 Transcription Factor Family AT2G19380 30.693 4.89e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04880 - - mtr:11405373 485.723