Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04878 ATGGAATTTATAACTTGTGCATTACTCCTTCTCTTGACATGTACCACACTTTATTTCCTTAGTAGAATCATAAGACCAAACCATAATCTTCCGCCGGGCCCAACCCGTTTTCCGATCATCGGAAACCTCCTTGAACTTGGAGAAAAACCACACCAATCTTTAGCCAAACTAGCAAAAATTCATGGTCCAATAATGAGCCTCAAACTAGGAAGAATAACAACTATAGTAATTTCTTCAGCTGAAATGGCTAAAGAAGTGCTATTAACTCATGACCAATTCTTGTCAAATAGAACAATTCCTCAATCTGTTTCGGTTCTTAACCATGAACATTTTAGCCTTGCTTTCATACCGGTTTCGCCACTTTGGCGCGAATTGAGAAAAATATGCAATGGTCAATTATTTGCACATAAGACTCTTGATGAAAGCCAAGATGTAAGGCGCAATAAAGTTCACCAACTTCTTCATGATGTGCACAAAAGTAGCCAAATTGGTGAAGCAATAGATATTGGAAATGAAGTATTTAAAACAACGATAAATTTATTATCGAACACTATTTTCTCCGAAGATTTGATTCAATCTACCGGGACAGCAGGAGAGTTTAAAGACTTGGTTACAAACATCACAAAATTAGTCGGATCACCAAACATAGCCGATTTTTTTCCATTGCTTAAGGTCATTGATCCTCAAGGTGTGAAAAGACAACAAACTAAAAATGTTGCTAAGGTGTTGGACGTCTTCGATCGATTGATTCGGAAACGTTTGAAGTTGAGGGAAAGTGAAGATTCTAACACACACAATGACATGTTAGATGCCCTTCTGAACATTTCTAAAGAAAATGAGATGATGGACAAAAACATGATTGAACATTTGGCACATGATCTTTTTGTTGCGGGAACGGACACAACAACTTCAACACTTGAATGGGCAATGACGGAATTAGTACTCAACTCAGAAATCATGTCAAAAGCAAAAAAGGAGCTAGAAGAAGTGGTAGGCAAAGGTAAACCTATTGAAGAATCGGATATTGCTAGTCTTCCGTACTTGCAAGCAATCATAAAAGAGACATTTCGATTGCACCCTCCAGTTCCTCTTTTGCTCCCTCGAAAAGCAGCGAAAGACGTGGAGCTATGTGGCTTCACCATTCCAAAAGATGCACAAGTGTTTATTAATGTGTGGACTATTGGTAGGGACCCAACTTTATGGGACAATCCAACTTTGTTCTCACCCGAAAGATTTCTTGGGTCAGATATTGATGTAAAGGGTAGGAATTTTGAGCTTGCGCCATTCGGTGCTGGAAGAAGAATATGCCCCGGTATGATGTTAGCTTTAAGGATGTTGCTTTTGATGTTGGGTTCATTGATCAACTCCTTTGATTGGAAGCTTGAAGATGACATGAAATTAGAAAATATGGACATGGAAGAAAAATTTGGAATTACCTTGCAAAAGGCACAACCTCTTCGAGTTGTTCCTGTTAAGATTAACAATTAA 1488 0.3837 MEFITCALLLLLTCTTLYFLSRIIRPNHNLPPGPTRFPIIGNLLELGEKPHQSLAKLAKIHGPIMSLKLGRITTIVISSAEMAKEVLLTHDQFLSNRTIPQSVSVLNHEHFSLAFIPVSPLWRELRKICNGQLFAHKTLDESQDVRRNKVHQLLHDVHKSSQIGEAIDIGNEVFKTTINLLSNTIFSEDLIQSTGTAGEFKDLVTNITKLVGSPNIADFFPLLKVIDPQGVKRQQTKNVAKVLDVFDRLIRKRLKLRESEDSNTHNDMLDALLNISKENEMMDKNMIEHLAHDLFVAGTDTTTSTLEWAMTELVLNSEIMSKAKKELEEVVGKGKPIEESDIASLPYLQAIIKETFRLHPPVPLLLPRKAAKDVELCGFTIPKDAQVFINVWTIGRDPTLWDNPTLFSPERFLGSDIDVKGRNFELAPFGAGRRICPGMMLALRMLLLMLGSLINSFDWKLEDDMKLENMDMEEKFGITLQKAQPLRVVPVKINN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04878 495 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 CDD CYP76-like 58 490 - -
Trre1g04878 495 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 9 492 - -
Trre1g04878 495 FunFam Cytochrome P450 76C4 23 489 - -
Trre1g04878 495 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Trre1g04878 495 Pfam Cytochrome P450 31 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 SUPERFAMILY Cytochrome P450 31 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 Gene3D Cytochrome P450 22 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04878 495 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04878 Trre-Chr1 54906748 54908449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04878 1 492 Cytochrome P450 AT2G45550 45.059 6.27e-159 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04878 - - gmx:100798291 807.364