Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04846 ATGATTTCATCTGGTATTAACTTGGTTATGACTATAATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTATGCACAAGACTCATTTGTGCTCGAATTCACTTGAATGCTTCTAGAAGATCTTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAAAGGGGTTGTCAAGGTATTGAACGCATTGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCTGCTGGAGAAAATTCACAATGCACAGTCTGTCTCTCAGAGTATCAAGGTGAAGATACACTGCGTATCCTCCCCCATTGTGGACACTCCTTCCATATGGCGTGCATAGACTTATGGCTGCAGCAGAATGCCACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTTTCAGAGAGAACGCGACCAATGCAACCTGTATATAGCTCCCATTATGGGATGGAGTCCTTTGACACGCATCATTATCACTGTATAATGGCCGAAAATGGATTATCGACAAGAACCTCTGATAACCGTGGGGTTAACCCTGTACAAGAGGATCACTGTCCATCTGAGGGTGGTGGAGCAGTTGAAATGGACAGCATCACCTCCTTAAGTCAGGGTGATTTCGTTAAAGATGAAGAGAAGAAGCATGTAGAGAGCCCATCAAATTTATAG 672 0.4167 MISSGINLVMTIIGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLSLMERGCQGIERIDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQGEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRISLREFSERTRPMQPVYSSHYGMESFDTHHYHCIMAENGLSTRTSDNRGVNPVQEDHCPSEGGGAVEMDSITSLSQGDFVKDEEKKHVESPSNL 223
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04846 223 SUPERFAMILY RING/U-box 81 135 - -
Trre1g04846 223 CDD RING-H2_EL5-like 86 129 - -
Trre1g04846 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 134 IPR013083 -
Trre1g04846 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Trre1g04846 223 Pfam Ring finger domain 86 129 IPR001841 -
Trre1g04846 223 SMART ring_2 87 128 IPR001841 -
Trre1g04846 223 MobiDBLite consensus disorder prediction 173 223 - -
Trre1g04846 223 PANTHER OS11G0150450 PROTEIN 1 184 - -
Trre1g04846 223 MobiDBLite consensus disorder prediction 207 223 - -
Trre1g04846 223 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g04846 Trre-Chr1 54667073 54668805 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04846 13 132 C3H Transcription Factor Family AT4G10150 37.097 1.60e-21 87.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04846 - - gmx:100794979 387.497