Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04844 ATGAATAATACTGACCCATATGGTTTACCGGAGGATCTCCGGCGACTAATCTCATCATCAAGAAACACTAATAATACACATCTACCTACAGCTGAACCACCATGTTTTTATGGCGGCGGCGGCGGTGGTGGTGGTGGTACTTTTCCTCCACCAAATTATTGCTATGAACCTTCTCCTATCATGGTTGGTGATGTTTTCTACCCTCAAAGTCATAGTCATACTCATAATCACTATGGTTACTCTTCTACTATTAACCCTACTACAAATATTTCTTCTGTAACTGCTAACTCAGATCATGCTACTGCTTCTGCTTCTGCAGCATTTTGTGTTGGTTTAGAAACTTCTTCTATAGATAATAATAATAAAGGATGGTTTGGTAATTTTGATTCTTGTAACAATAGATGGCCAAGACAAGAAACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAACACTACAGATTCTTCAGACAGCTTGAAGCAATATGTGGAGAAGCCTCAACTTCAGACAAAACTACATCTCATGCTAATGATGCTGTTGTTGCTACTCAAACTCCAAACTTCACAATCAACCAAGAAAATATTAATGGTGTTATTGATCATAATCTGATCAATAACCTCAAGTACTCGGAGAGTCTAAGTTTCTCGAATTCATCTGAATTCGAGACATCTTCATCTGAGAACAACGACGAGGATCTCTCGGCCATTGCACACACGATGAAATCGTCGAAGCAGAAAGGGGTGGACAAAAGTGATAGGAGGGGGAGGAAAAGTTGGAGAGGTAAAGTGGAGGAGATTGTAGATTCTCACATGAAGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTAAGTGTTGTTGAACAAAGAGAACAAGAAATGGCATTAAAAGAAGAAGAAAGGAAAAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATTGTGCATTGTTAGAAGTTGTAAGAAAACATATTGGAGTTGAAGCATCAAGTAAGAATAATGAAAGTAATAATACAAATTATGAATACCCTTTTGGAAATGTGGATCATGGATGGACAGAAATGGAGATTTCAAGTTTGATACAACTAAGGACTAGTTTTGAACATCAAGTAAGAGAAAAAGGGTATTTGGATGATTGTGTTTGGGATGAAATAGGTGAAAAAATGGTGTATATGGGATTTAATAGAAATGGTGCTGAGTGCAAGAAAATATGGGATGAGATTAGTATGTCTCTTAGAAGGTCAGTGGATTGTGGAGTCAAATTTACAAGACCTTGGTGTTTGGGACTTAAGGTGACAGATGATGACGACCTTTGA 1539 0.3736 MNNTDPYGLPEDLRRLISSSRNTNNTHLPTAEPPCFYGGGGGGGGGTFPPPNYCYEPSPIMVGDVFYPQSHSHTHNHYGYSSTINPTTNISSVTANSDHATASASAAFCVGLETSSIDNNNKGWFGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEASTSDKTTSHANDAVVATQTPNFTINQENINGVIDHNLINNLKYSESLSFSNSSEFETSSSENNDEDLSAIAHTMKSSKQKGVDKSDRRGRKSWRGKVEEIVDSHMKKIIETQDAWMERMLSVVEQREQEMALKEEERKRKESMRFDQEIHELWAKEKAWVEARDCALLEVVRKHIGVEASSKNNESNNTNYEYPFGNVDHGWTEMEISSLIQLRTSFEHQVREKGYLDDCVWDEIGEKMVYMGFNRNGAECKKIWDEISMSLRRSVDCGVKFTRPWCLGLKVTDDDDL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04844 512 Gene3D - 135 197 - -
Trre1g04844 512 Gene3D - 426 488 - -
Trre1g04844 512 Coils Coil 340 367 - -
Trre1g04844 512 FunFam trihelix transcription factor PTL-like 135 197 - -
Trre1g04844 512 Pfam Myb/SANT-like DNA-binding domain 425 489 IPR044822 -
Trre1g04844 512 Pfam Myb/SANT-like DNA-binding domain 133 220 IPR044822 -
Trre1g04844 512 ProSiteProfiles Myb-like domain profile. 426 483 IPR001005 -
Trre1g04844 512 PANTHER FI21293P1 100 491 - -
Trre1g04844 512 CDD GT1 133 199 - -
Trre1g04844 512 MobiDBLite consensus disorder prediction 296 319 - -
Trre1g04844 512 MobiDBLite consensus disorder prediction 301 319 - -
Trre1g04844 512 ProSiteProfiles Myb-like domain profile. 133 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04844 Trre-Chr1 54644647 54647356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04844 134 498 Trihelix Transcription Factor Family AT5G03680 42.029 9.35e-88 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g04844 Myb_DNA-bind_4 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04844 - - gmx:100784522 554.673