Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04830 ATGGACTTGCCGAAACACCGTCCCACACCGACAACCTCTTTAAGGGACGCATCAGACTCCTCCACTGGTAGCTGGGACGCTCTAGAATGGACCAAAATTGAGCCAATTGCGCGTTTTGTCTCTCCTGCGAATCTCGATTTCTTGCTTGATGACGAACAAGTTGTTGCCGAAGGACATGGTGTTGTTCTTGTCAATACAGATGATGCAGGTGTCTTGATTGTAACAAACTTTCGTCTAATATTTTTGAGTGAGGGAACAAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCAACTATTGAGAAGTTTAACAAGACAGCTGTAAAGGTTCAGTCAAATACTCATCAATCCGACAAGACACCAACACAAAGACTGCTGCAGGTGATTGGGAAAGATATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACAAAACAGAGACGTGCAATATACGATGCACTACTGAAGTGTACAAAGCCAGCAATATTATGGGATCTTTATGCTTTTACATCTGGGCCTTCCAGTTTCAAGAACACCTCTCCATTGGTGCGTTTATTGGATGAGTATTTTCGACTTATTGGCAAAGCTTCTCACCGTGCTTCAATGGACATGATTGAAAGTGGATCATTCACATTGTCAAATGACTTATGGAGAATAAGTGCTGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAAAGCATTAGTGATGATGAAGTACTCCAGGCTTGCAAATTCCGTGCAAGATGCCGACTGCCTGTAATTTCTTGGTGTCATCCTGTTACTGGCGCAGTTCTTGCACGTTCTTCCCAACCTTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGACGAAAAACTTGTGGCTGCACTTTGCAGTAACCGTGATGGCTCAAGGAGAAAGCTATATATTGCTGATGCGAGACCAAGAAAAAACGCATTAGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGATAATCTTTTTTGGTATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATTCATGGACACTCAAGGCAGAACATCATCTGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCAATATGGGGTGGCGGCAATTTAAGTAGTATGTCTGCTTCAGTATCAACCCTTGGAGACAGTGGATGGTTATTGCATGTTCAGAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCCCGTGTTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTAATTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCAGAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTTCTGATCGTGTGGGAACACCATCTATATCTGGAAGTGGCAACATGTCTTTCGAGTTACCTAGGCAGTCTTCAGCTAGTATCATCCCATCATCACCAATGCGCCAGCCATCAGGAACATTTGTGTCTCAACCTCCAGTTTCATCTCATGCACATAACTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGCTGATTGTGTGTCACAACTGCTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGCTTTCTTCTCGCTTTGGAAACTTCTTCTTTAATAGTGAGAAGGAGAGGCTTCAGTGCAACGTGTTTGAAAGTTGTGGTTGTTTGTGGGCATACTTGGCTGATAGGCGGACATCAGAAGGAAGTACTCATGCACACTGTAATCCCTTTTATGATCCACTGAAGTACAGTGGTCCTCTTCTGCCCCCAGCAGCAGCGTTAGCCCCAACTATATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAGAGTGGAGAGATCGAAGCACAATGTCGGAAGATAATACTGAAAAACTCTGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAAGCTAGAGAATATACAATTGCTATGGAATCGTTGAATGCTGAATTGCGACGTGAGAAACTGTTAAACATCTCAGCTATGAACACGGCCAAGAGGATAACCAAAGAAAATACGGACATAAAGCGTGCAATTCGGTCAATTGGGTGCAAGATTCACATTTCTAGTAGTGGTGATTGCATTGTTGACATTGAAAACAACCCAATGGAAGCACGTCCAAACTTGTATTGTTCATCTAGGCAAGGATCAAGTAGTGCTCTGATTAATGATAAAAAGGATCTATCTGTTTCTGTAACAGAAGATAACAATGATGATGGGAACAATGTTATTGGTCGAATTTGTGAATCTCTATGCCCATTTCGCACTGGAGATGGAGGCTGTAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTTTGAAAGCAAATTTTGATGCATTTGACCAACTTTCGATTGATGACAGTTATTTCAAGCCTAAGTGA 2538 0.4283 MDLPKHRPTPTTSLRDASDSSTGSWDALEWTKIEPIARFVSPANLDFLLDDEQVVAEGHGVVLVNTDDAGVLIVTNFRLIFLSEGTRKVIALGTIPLATIEKFNKTAVKVQSNTHQSDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRAIYDALLKCTKPAILWDLYAFTSGPSSFKNTSPLVRLLDEYFRLIGKASHRASMDMIESGSFTLSNDLWRISAVNSSYTMCQSYPFALVVPKSISDDEVLQACKFRARCRLPVISWCHPVTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSNRDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIIFFGIDNIHAMRESFVRLREFMDTQGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLISLANLLLDPYYRTFRGFQALVEKDWLAFGHPFSDRVGTPSISGSGNMSFELPRQSSASIIPSSPMRQPSGTFVSQPPVSSHAHNSNNYSPIFLQWADCVSQLLRMYPFAFEFSAAFLVDFLDCMLSSRFGNFFFNSEKERLQCNVFESCGCLWAYLADRRTSEGSTHAHCNPFYDPLKYSGPLLPPAAALAPTIWPQFHLRWACPEEAQSGEIEAQCRKIILKNSEMQKAKEVAERKAREYTIAMESLNAELRREKLLNISAMNTAKRITKENTDIKRAIRSIGCKIHISSSGDCIVDIENNPMEARPNLYCSSRQGSSSALINDKKDLSVSVTEDNNDDGNNVIGRICESLCPFRTGDGGCRWPNGGCAQLGSQFVGLKANFDAFDQLSIDDSYFKPK 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04830 845 CDD PTP-MTM-like 257 547 - -
Trre1g04830 845 Gene3D - 59 158 IPR011993 -
Trre1g04830 845 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 649 IPR029021 -
Trre1g04830 845 SUPERFAMILY PH domain-like 48 170 - -
Trre1g04830 845 SMART gram2001c 37 107 IPR004182 -
Trre1g04830 845 ProSitePatterns Tyrosine specific protein phosphatases active site. 433 443 IPR016130 GO:0016311|GO:0016791
Trre1g04830 845 PANTHER MYOTUBULARIN-RELATED 19 767 IPR030564 -
Trre1g04830 845 ProSiteProfiles Myotubularin phosphatase domain. 194 645 IPR010569 -
Trre1g04830 845 Pfam Myotubularin-like phosphatase domain 167 586 IPR010569 -
Trre1g04830 845 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g04830 845 Coils Coil 670 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04830 Trre-Chr1 54540656 54556888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04830 1 845 Protein tyrosine phosphatase (PTP) family AT3G10550 67.795 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04830 K18081 - gmx:100781842 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04830 1 54540656 54556888 Trre1g04830 1 54540656 54556888 ECH