Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04825 ATGGAGCATTTCATGAATGAGATAAACATTCCGACAAGTTTGAGGCATCCTAACATGGTTTCACTCTACGGCTGCACCTCTAGGCGTAGTCGTGAACTCTTACTAGTATATGAATATATTCCGAATGGCACTGTTGCTGATCATATTCATGGCAACAAAGCAGAAGAAAGATTATTAACATGGCCTATCCGCATGAACATTGTAATAGAGACTGCTAACGCACTTGCCTATCTCCACAATTCGGAGATAATTCATCGTGAATTGCTTGCTCATGTCCGCAGATACTAG 288 0.4132 MEHFMNEINIPTSLRHPNMVSLYGCTSRRSRELLLVYEYIPNGTVADHIHGNKAEERLLTWPIRMNIVIETANALAYLHNSEIIHRELLAHVRRY 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04825 95 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Trre1g04825 95 Pfam Protein tyrosine and serine/threonine kinase 2 90 IPR001245 GO:0004672|GO:0006468
Trre1g04825 95 SUPERFAMILY Protein kinase-like (PK-like) 2 88 IPR011009 -
Trre1g04825 95 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04825 95 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 88 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04825 Trre-Chr1 54474654 54474941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04825 1 88 Receptor kinase-like Gene Family AT1G25390 68.539 2.68e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre1g04825 PK_Tyr_Ser-Thr 7.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04825 - - sind:105160610 146.747