Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04818 ATGGTGTTGGATTGGTTGCTCAAGGATCGGTGCCGAATATCTCTTCTGTTTGCTACGGCACAACTTCTAATGATCGTTCATCATAAAAATTTGGTCTCTCGCATTGGATATTGTGATGAAGATAAAATCAAAGCATTGGTTTATAAATACATGACCAATGGAAATCTCCAACAACAATTATCAGTGAAAAATACAAATATCTTGAAATGGAGTGAGAGGCTTAACATTGCAGTTGATGCAACACATGGTGGTTGTAAAAGAATCAGATAA 270 0.3593 MVLDWLLKDRCRISLLFATAQLLMIVHHKNLVSRIGYCDEDKIKALVYKYMTNGNLQQQLSVKNTNILKWSERLNIAVDATHGGCKRIR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04818 89 Gene3D Transferase(Phosphotransferase) domain 1 16 84 - -
Trre1g04818 89 PANTHER OS07G0107800 PROTEIN-RELATED 18 83 - -
Trre1g04818 89 Pfam Protein tyrosine and serine/threonine kinase 16 83 IPR001245 GO:0004672|GO:0006468
Trre1g04818 89 SUPERFAMILY Protein kinase-like (PK-like) 10 83 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04818 Trre-Chr1 54385336 54388991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04818 20 86 Receptor kinase-like Gene Family AT4G29450 50.685 1.39e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre1g04818 PK_Tyr_Ser-Thr 2.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04818 - - qsu:112024438 110.923