Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04816 ATGGATTATGTTAGCAGTGGAATGATCCTTTTGGTGACATGCATTGTCACATACTTGATTGGTTCACTTTATGCAAGAAGCAAAAATTCAAATAAGCTTCCACCAGGACCTTCCATTTTCACTATCATGTCACATGTTTTTGAATTATACTACAAACCACAACAAACACTTGCAAAATTTGCTAAGTTTTATGGTCCTGTTATGCTTATTAAGTTATGCACTGAACCCACTGTGATTATTTCATCATCAGATATGGCCAAAGAAATTTTTCATGCTAATGATTCTTTGTTCACTGATAGATCTGTTCCTCATAACACAACTACTCATAATCACAACAATTTTAGCATTGTTTTTCTCCCATTTTCACCTCTTTGGCAACACCTTAGAAAAATTTGCCATAGTAATTTATTCTCTAATAAAACTCTTGATGGAAGTACAGAACTTAGACGCATGAAATTGAAAGATCTTATGAATGATATGCATAAAAGCAGCTTAACCGGTGAAACTGTTGATATCGGTAGAGCTGCTTTTAAGGCTTGCATTAATTTTTTGTCATACACTTTTGTGTCTCAAGATTTTGTAGAATCTTTAGATGATGAATATAAGGATATAGTGTCAACTCTATTGAGTGCTGTTGGAACACCAAACATTGCTGATCATTTTCCTATATTGAAGATTCTTGACCCACAAGGCATTAAAAGACACACAACTAAATATGTTGCAAAAGTGTTCTATGCATTAGATATCATAATTGACAAAAGAATGAAGCTAAGACAAAGTGAAGATTATGTCTCAAAGAATGACATGTTAGACACCTTGTTGGACATTTCCAAAGAAGATACCCAAAAGATGGACAAAAAACAGATTAAACATCTATTACTTGATCTGCTTGTGGCGGGAACAGAAACATCGGCATATGGATTAGAAAGAGCAATGACTCGTGTAGTACACGATCCAAGGGTTATGTCAATAGCCAAAAAGGAACTCGACGAAACTATTGGATTAGGAAATCCAATCGAGGAATCCGACATTGACAGGCTTCCATACTTACAAGCAGTGATAAAAGAGAGTTTACGATTACATCCTCCGGCACCAATGTTGCTTCCTCGAAAAGCAAGAGTAGATGTGGAAATATCAGGATATACAATTCCAAAAGGTGCACAAGTTCTGATCAATGAATGGGCTATTGGTAGAACAGAAATATGGGATGATGCACATTTGTTTTTACCAGAAAGATTTTTAGGCTCTGAAATTGATGTCAAAGGTCGACACTTTAAACTTACGCCGTTTGGCAGTGGCCGACGAATATGTCCCGGCTCACCATTGGCTGTTAGGATGTTACATTTGATGTTGGGATCATTAATCAACTGCTTTGATTGGAAACTTGAAAATAATATGGAGCCTAAGGACATGAACTTGGACAAACCTCTAAGAGCTATTCCAGTTGTACTAAACAACATTAAGTAA 1467 0.3599 MDYVSSGMILLVTCIVTYLIGSLYARSKNSNKLPPGPSIFTIMSHVFELYYKPQQTLAKFAKFYGPVMLIKLCTEPTVIISSSDMAKEIFHANDSLFTDRSVPHNTTTHNHNNFSIVFLPFSPLWQHLRKICHSNLFSNKTLDGSTELRRMKLKDLMNDMHKSSLTGETVDIGRAAFKACINFLSYTFVSQDFVESLDDEYKDIVSTLLSAVGTPNIADHFPILKILDPQGIKRHTTKYVAKVFYALDIIIDKRMKLRQSEDYVSKNDMLDTLLDISKEDTQKMDKKQIKHLLLDLLVAGTETSAYGLERAMTRVVHDPRVMSIAKKELDETIGLGNPIEESDIDRLPYLQAVIKESLRLHPPAPMLLPRKARVDVEISGYTIPKGAQVLINEWAIGRTEIWDDAHLFLPERFLGSEIDVKGRHFKLTPFGSGRRICPGSPLAVRMLHLMLGSLINCFDWKLENNMEPKDMNLDKPLRAIPVVLNNIK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04816 488 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 FunFam Cytochrome P450 76C4 25 486 - -
Trre1g04816 488 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 8 475 - -
Trre1g04816 488 Gene3D Cytochrome P450 20 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Trre1g04816 488 Pfam Cytochrome P450 34 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04816 488 CDD CYP76-like 61 481 - -
Trre1g04816 488 SUPERFAMILY Cytochrome P450 34 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04816 Trre-Chr1 54347958 54349554 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04816 1 475 Cytochrome P450 AT2G45550 38.650 1.18e-123 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04816 - - gmx:100800810 645.58