Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04801 ATGTTGGAAATGGAAAAGGATTTTGATTCCAAGCTAAAGATTCAAAGAAGTTCTTCCTCTAACAATGGTGGTTCTGGTGCTGGGAATGTTCAGAGATCCAAAAGTTTTGCTTTTAGAGCTCCTCAGGAGAATTATACCATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGTTCTTATTCTAAGGTTGTGAGGGCAAGGAAGAAGGACACAGGAGTTGTGTATGCATTGAAGATCATGGACAAAAAATTTATCACCAAAGAGAATAAAACTGCTTACGTGAAGTTGGAACGCATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGCGACTATATTTCACATTTCAAGACTCATTTTCTCTGTACATGGCACTTGAATCATGTGAAGGTGGAGAACTTTTTGATCAAATTACCAGGAAGGGTCGCTTACCTGAGAATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATGGTTTGGGAGTTATACATCGTGATATTAAGCCAGAGAACCTATTACTTACATCTGAAGGACACATTAAAATAGCTGATTTTGGGAGCGTGAAGCCTATGCAGGATAGCCAAGTTACTGTCCTTCCGAATGCAGCATCAGATGACAAAGCCTGCACCTTTGTGGGAACAGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCTCCCGCAACTTTTGGAAATGATCTCTGGGCACTTGGCTGCACATTATATCAAATGCTTTCTGGAACTTCACCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAGAGAATTATAGCCAGAGAAATTCGATTTCCAGATTACTTTTCAGACGAAGCCAGAGACCTTATTGACAGGCTGTTGGATTTAGACCCCAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTATTTTGAAAATACATCCATTTTTCAAGGGGGTTGACTGGAATAACTTAAGAGCACAAACTCCTCCAAAACTTGCTCTCGAACCCGGGACTCAATCGCCTGCTGATGAGTCATCATGGAGTCCTTCTCACATTGGCGACGGTTCTGCTAGACAGCCTGACGGTGCCACATCGTCTGCAGAGGGAACTGGTCACATAACAAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAGTTTTTGGAGCCTGGTGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTACAAAAACTATCAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCGAAGTTGATCTATGTGGACCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCAGATAATCCAAATGATTTAAACATTCAAGTGACTAGTCCCTCAAATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAGGATGCTAAGCAAAGAGCGTCGCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA 1467 0.4145 MLEMEKDFDSKLKIQRSSSSNNGGSGAGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRARKKDTGVVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLPENEARFYAAEVVDALEYIHGLGVIHRDIKPENLLLTSEGHIKIADFGSVKPMQDSQVTVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKIHPFFKGVDWNNLRAQTPPKLALEPGTQSPADESSWSPSHIGDGSARQPDGATSSAEGTGHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLSSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSNFKICTPKKVMSFEDAKQRASQWKKAIEGLQNR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04801 488 Gene3D Phosphorylase Kinase; domain 1 48 133 - -
Trre1g04801 488 SUPERFAMILY Protein kinase-like (PK-like) 47 348 IPR011009 -
Trre1g04801 488 FunFam 3-phosphoinositide-dependent protein kinase 2-like 134 332 - -
Trre1g04801 488 Gene3D - 365 488 IPR011993 -
Trre1g04801 488 FunFam 3-phosphoinositide-dependent protein kinase 2-like 48 133 - -
Trre1g04801 488 MobiDBLite consensus disorder prediction 331 370 - -
Trre1g04801 488 SUPERFAMILY PH domain-like 311 487 - -
Trre1g04801 488 SMART serkin_6 50 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04801 488 FunFam 3-phosphoinositide-dependent protein kinase 1 358 488 - -
Trre1g04801 488 MobiDBLite consensus disorder prediction 340 370 - -
Trre1g04801 488 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 336 - -
Trre1g04801 488 Pfam PH domain 385 487 IPR033931 -
Trre1g04801 488 ProSiteProfiles Protein kinase domain profile. 50 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04801 488 CDD STKc_PDK1 48 317 IPR039046 GO:0004674
Trre1g04801 488 Gene3D Transferase(Phosphotransferase) domain 1 134 330 - -
Trre1g04801 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Trre1g04801 488 MobiDBLite consensus disorder prediction 14 30 - -
Trre1g04801 488 Pfam Protein kinase domain 52 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04801 488 Coils Coil 468 488 - -
Trre1g04801 488 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04801 Trre-Chr1 54014147 54020794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04801 1 488 AGC Kinase Gene Family AT3G10540 81.466 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Trre1g04801 Pkinase 1.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04801 K06276 - gmx:100788780 886.33