Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04797 ATGGAGGATACTCACGACAACGCCGTTCTTCCAAATAACAAACACTCCACCGAACAGGAAAATACTGATGAGCTAGAACGAAGATCAAAGAAGTATCTTAGAGGAGAAGGTGCTGATTTGAAGGGTTTGAAGGATAAAAAACTAAGGGGTCAGATAGTTGCTAGAGAGAAATTGTATGGACAAACTGCAATAGCTGCTGCCAAGACTGAGAAATGGATTATGCCTAGCGAGGCGGGTTATATTGAGCCTGAAGGAATAGAAAAGACTTACACGATCAAGCAGGAGGCAATAGCCCGTGAAGCAGATATCTCAAGCTTAAGGAACCAATATGATATTACTTTACCAGAGTTTGGTCCATATACTCTAGACTTTACTTCAAGTGGCCGGTATATGGCTCTTGGCGGTCGTAAGGGCCACCTAGCAATTGTGGACATGATGAATCTGAGCCTTATCAGAGATTTTCAGGTAAGAGAAACTGTGCGTGATGTTGTATTCTTACATAATGAGCTCTTCTTTGCTGCTGCCCAGAAAAAGTATTCTTACATCTATAGTCGTGAAGGCACAGAGCTTCACTGCCTAAAGGAACATGGTTCAGTGTTGAGGCTACAATTTCTGAAAAACCATTTTCTGTTGTCTTCTACCAACAATTATGGGATGCTTCTTTATCAGGATGTTACAATGGGCGCCATAGTTGGGAAATATCGAACTGGTTTAGGACGTACAAATGTGATGCAAGTAAACCCTTACAATGCAGTTGTTTCTTTAGGTCACTCGGCCGGTACAGTTACTATGTGGAAGCCAACCAGTTCTTCCCCCCTTGTCAAGATGCTATGTCATCAAGGGCCAGTCACAGCACTGGCATTTCACTCAAATGGCCACATAATGGCTACTGCTGGGGTAGATAAAAAAATTAAGCTTTGGGATTTGAGAAAGTTTGAGGCTTTCCAAACATTACCTGGCTATGCAAATACTTTGGATTTTAGTCAAAAAGGCTTGCTTTCTTGTGGTACTGGTTCATATCTGCAGGTTCTGAGGGATGCTTCTGGTGCACAGAACTATTCAAGGTACATGACTCATTCAATGGCAAAGGGTTACCAGATAGGAAAATTAGCTTTTCGACCATACGAAGATGTTCTATGTATAGGGCATTCAATGGGATATTCTAGTATTCTTATTCCAGGAGCAGGAGAACCCAACTTTGATTCATGGGTTGCAAACCCATTTGAAACACCTAAACAGAGAAGCGAAAAGGAAATAAAGGCTCTTCTTGATAAACTTCCACCTGAGACAATCATGCTGGATCCCAGCAAGATCGGTACAGTGAAAGTTACTAAAAAAGAGAAGAAAACTGCACAAGAGATAGAGGCAGAGATGGAAGCCGCCATTGAAGGTGTCAAGGGCAAAAAACTGAAAAAGAAAACAAAAGGAAGAAGTAAGGCAGGTAAAATAATGCCGAAAAAGCAAGATGCAATTGCTAATGCAAAGAGGCCTTTCTTAGAGCAGAAAATGCAAGAAGAGAAAAACATATCTAATAAGAAACAGAAAACTAATGAGGGAGTTGATCTACCAAAATCTTTACAAAGGTTTGCTCATAAGAAACCATCGTCATAA 1611 0.4091 MEDTHDNAVLPNNKHSTEQENTDELERRSKKYLRGEGADLKGLKDKKLRGQIVAREKLYGQTAIAAAKTEKWIMPSEAGYIEPEGIEKTYTIKQEAIAREADISSLRNQYDITLPEFGPYTLDFTSSGRYMALGGRKGHLAIVDMMNLSLIRDFQVRETVRDVVFLHNELFFAAAQKKYSYIYSREGTELHCLKEHGSVLRLQFLKNHFLLSSTNNYGMLLYQDVTMGAIVGKYRTGLGRTNVMQVNPYNAVVSLGHSAGTVTMWKPTSSSPLVKMLCHQGPVTALAFHSNGHIMATAGVDKKIKLWDLRKFEAFQTLPGYANTLDFSQKGLLSCGTGSYLQVLRDASGAQNYSRYMTHSMAKGYQIGKLAFRPYEDVLCIGHSMGYSSILIPGAGEPNFDSWVANPFETPKQRSEKEIKALLDKLPPETIMLDPSKIGTVKVTKKEKKTAQEIEAEMEAAIEGVKGKKLKKKTKGRSKAGKIMPKKQDAIANAKRPFLEQKMQEEKNISNKKQKTNEGVDLPKSLQRFAHKKPSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04797 536 PANTHER WD-REPEAT PROTEIN BING4 11 530 IPR040315 -
Trre1g04797 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Trre1g04797 536 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g04797 536 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Trre1g04797 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Trre1g04797 536 MobiDBLite consensus disorder prediction 468 536 - -
Trre1g04797 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Trre1g04797 536 SUPERFAMILY WD40 repeat-like 109 384 IPR036322 GO:0005515
Trre1g04797 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Trre1g04797 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Trre1g04797 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Trre1g04797 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Trre1g04797 536 SMART WD40_4 186 223 IPR001680 GO:0005515
Trre1g04797 536 SMART BING4CT_2 355 435 IPR012952 -
Trre1g04797 536 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Trre1g04797 536 MobiDBLite consensus disorder prediction 499 519 - -
Trre1g04797 536 Gene3D - 107 391 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04797 Trre-Chr1 53972482 53976753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04797 118 348 U-box Gene Family AT1G04510 24.898 3.48e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04797 K14768 - gmx:100786818 797.734