Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04795 ATGAACTGTCTTCAGAATCTTTCCAGATCCTCTGTTTTACCTTTCCATACACTCGTTGCTCCTCCTTCTCGCCATCATAACACTTCTTCTCTATCCTTTCTATTCATCCGTAAATCTCATCACAACCGAACCATGATACTCAAGGCTGCTTCTGGTTCTATACCCAGTGCAGAGACAAGCAGCTCCGATGTCGAGGAGGAGGTGGTAAAGTCTGAGACATACAGTAATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCACGAATTAGGAATGAACTACAACTTCATCCGACCAGACTTGATTGTTGGATCATGCCTGCAGACTCCTGAAGATGTTGATAAGCTGCGTAAAATTGGAGTGAAAACTATATTTTGCTTGCAACAAAATCCAGACCTAGAATATTTTGGAGTTGACATCAATGCCATACGAGAATATGCCAAGACATTCGATGACATCCAACACCTGCGTGCTGAGATAAGGGACTTTGATTCATTTGATTTACGAAAGCGGCTTCCAGCTGTAATTAGCAAATTATACAAGGCAATCAAATCCAATGGGGGTGTGACATATATACACTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTCAATGATGCTAATGCACTACTTCTGAGCAAAAGGTCGTGCTTTCCGAAACTGGATGCCATAAAAAGTGCAACGGCCGATATTCTTACAGGCCTCAGTAAGAAGCCTGTCACTTTGTCATGGGGACACAACAATTGCTCTACAGTCGAAATTTCGGGACTTGATATTGGATGGGGGCAGAGAGTGCCCTTAGATTTTGACGACAAACGGGGTTCATGGTTTCTCGAGAAGGAAATGTTTGAAGGGCGCTACGAGTACAAGTACATTGTTGATGGGGAATGGACTTGCAATAACAATGAGCGTGTAACATCTCCCAACAAAGACGGTCATGTCAACAATTTTATCGAAGTTATTGATGATGCGGACGGTGACCGTGCCTCCCTTCGGGATAGAGTGACTGGTGATGATCCTGATCTCACAAAGGATGAACGAATCAAAATAATAGAGTTTCTGGAAGCTTTTCCCGATGAGGATCTCTGA 1134 0.4347 MNCLQNLSRSSVLPFHTLVAPPSRHHNTSSLSFLFIRKSHHNRTMILKAASGSIPSAETSSSDVEEEVVKSETYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQNPDLEYFGVDINAIREYAKTFDDIQHLRAEIRDFDSFDLRKRLPAVISKLYKAIKSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNDANALLLSKRSCFPKLDAIKSATADILTGLSKKPVTLSWGHNNCSTVEISGLDIGWGQRVPLDFDDKRGSWFLEKEMFEGRYEYKYIVDGEWTCNNNERVTSPNKDGHVNNFIEVIDDADGDRASLRDRVTGDDPDLTKDERIKIIEFLEAFPDEDL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04795 377 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 237 IPR029021 -
Trre1g04795 377 CDD DSP_laforin-like 94 241 IPR045204 GO:0019203
Trre1g04795 377 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 88 268 - -
Trre1g04795 377 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 252 IPR020422 GO:0006470|GO:0008138
Trre1g04795 377 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 374 - -
Trre1g04795 377 CDD E_set_AMPKbeta_like_N 254 335 - -
Trre1g04795 377 Pfam Dual specificity phosphatase, catalytic domain 138 233 IPR000340 GO:0008138|GO:0016311
Trre1g04795 377 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 250 340 - -
Trre1g04795 377 Gene3D Protein tyrosine phosphatase superfamily 88 368 IPR029021 -
Trre1g04795 377 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 230 IPR000387 GO:0016311|GO:0016791
Trre1g04795 377 SMART dsp_5 95 245 IPR020422 GO:0006470|GO:0008138
Trre1g04795 377 Pfam Glycogen recognition site of AMP-activated protein kinase 254 337 IPR032640 -
Trre1g04795 377 Gene3D Immunoglobulins 250 340 IPR013783 -
Trre1g04795 377 SUPERFAMILY E set domains 253 336 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04795 Trre-Chr1 53884333 53889723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04795 94 371 Protein tyrosine phosphatase (PTP) family AT3G52180 68.345 2.22e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04795 - - mtr:25484855 654.44