Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04791 ATGGCATTACAGTCATTATCTTTGGTGATCTTACTGGCATATGGTGCACTGATAACTCTTGTCTCATTGACACCATGCTGGTACGTCATGGTCACACATATCGAGAAACGTGTGAATTTGAACTCAAAAAATATTGTAGCTCAATTGCAATCAGAAACTCAGCACTCAGCTGAACTGTTGCATCCAATGAAATCCTCATCAACAAATTTAGCAAGATTGTTGAGTTCATCTCTTGATTCTACTTACATCTCTTTCTCTGATATTGAAACCAAGATTGCTCCATTACTATTTCAAGCATTTGAGATGGTTCCTCACTTAAGTCAAATCTCATACATAGGAATGGAAGGCCTCTTTTTCTCATATTGCAGTGATCGTGATCAAGCTCTAGCGATGTTCTCTAATTCATCATCAAATAATCCCTTATACTATATTCAGCATGTGAATAATGAAACTGGAGAGGTTTTTGGAGAAGCCGTAATATCAAACTCCTCTATCAACACAAGTTGGATTAAGGAAGCATCTAATCTTTCAACTGAATTTGCGTCGTTAGGAACCAAATGGAGCAATGGCCACGATCTTTTGTTCCTCAATTCTGCTAGAATCAACAGAATAGGAGTGATGTCGCTAGGATTTACTGCAAAATCAATAACCGATTATGTTACTAGTGTTGACCGTCTAGGCACGAGCTCGTATTTAGCTACCAAAGATGGACAAATTCTTGTGGAAGGGATTCAACATATCCGTTTCGTTGTTTTTAACGATTCAGTTTCCTTCCAATCAGTCAATGCAAATGGAGATGTGATAAAGAATGAGGGTACTGTCTCATGCAAGAATGAAGCTATCACTTCTAATTTGAATATTCAAGATAATAAATATCTTATCCACTGCTACCTCATTGATATAATGGGAATAGAATCAGTGTATATTTTGGCTGTACCAAGAAATGGATTTGATGTGAGTTATAAAAAAATGGGATTGGCTCTATTGAATGTAATGATGGTAATGATACTTGTTGCTGTCTTTAGTTTTCTATTTATAGATGGTAGAGCCATAAGAAGAGAAATGCACTTGTGTGCCTCACTCATCAACCAAAAAGAGGCCACACAACAAGCCGAGAAAAAAAACATGAACAAGAGCCTCGCAGTTGCTAGTGCCAGCCACGATGTTCGCACTTCTCTCGCAGGCATTACTGCTCTCATAAAAATTTCGTCTAACTTAGTTCCCTCTGGTTCAGAATTGGCATCAAATTTAATCCAAATGGAGGACTGTACGCAAGATTTACTAGGACTATTGAACTCTATACTTGATACAAGCAAAATTGAGGTAGGAAAAATGGAACTCAAGGAAGAAGAATTTGATTTATCTCATTTTTTGGAAGAAGTGGTTGATATATACTATCTTGTAGCCATGGAGAAAGGTGTAGAACTTGTTTTGGACCCTTGTAATGGTTCTATTATAAAATATTCACATGTGAAAGGCGATAGAGGAAGACTTAAACAAGTTTTGTGTAACTTACTGAACAATGCTGTCAAATTTACAAATGAAGGTCACATAACAGTTCGAGCTTGGGCGCAGAAGCCGACATTAAGTAGTTCAATAATCAAGACTAATCAACATAGTTTCATGAAACATTTGTCACACTTATTTTCGAAGAAAAAAAATGAAGCAGATGAGGAGGACATAGAGAAAACGATGAATTCGATTCAACAACATCCTCCACGTTATATGGATTTCGTGTTTGAAGTGGATGATACAGGAAAAGGAATTCCGAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTTAAAGAAACTGATCCTGTCCAAGAAGGAACAGGTTTAGGACTTGGAATTGTGCAGTCTTTGGTACGTTTGATGAATGGAGATATTGAAATTGTGGACAAGAATATTGGTAAAAAAGGAACATGTTTCAGGTTCAATGTTCAACTCAGTTTATGTGAAGGAGAAACAGTGACAGATTTTAGTGCAAGGGGAGGTCTTGAGTATGGAACAAGTAGCAGGAATCAAGCTCAAGGGAGAACCATTCATGCTACTATTTCTAATTCAAACATTTGTTCCATGAGTCCTATGTTACATATTTGCAACTCTAGTCCTAGGCTCGAGGCTTCGCGTGTTGTTCTTTTCATCGGAAACAAGGAGCGTCGGAAGATTTGTAAAAGGTTCATGAAGAGCTTAGGGATTAAAGTTAAGGTTGTGAATTGTCAAGAAGGTTTGTTTGATACTTTAGAGGAGATCAAACAAAAGGGTCGTCGTTCCGGTGGCCCTAGTTCTCCAGAATCTTCTTCCAATTTGAGTCTTTCGGATTCCACATCTCATAATTCATTTTCAAGAACCAGAGGTGTTCCTTTGAGTTCTATGGGTGGAAATGAGTATACATCTCCGGTGTTCAAGAAGACGAATGTTGGAACTGTCCCGGGATTCGTCTTGATTGTCATAGATGCAAATGAAGGACCATCATTTCCTAAACTTTTCGGAATTGTATCCAACTTCAAGAAAGGCTTTTCCAGCCATTGTAACATTGTTTGGTTGGATAATCCACATTTCCATCGTATCGATTCCAAAATAATTGATCAAAATGACATTGTCATATTGAAGCCGTTTCATGGTAGTCGTTTGTTCCAAGTCATAATGCTTCTTCCTGAGTATAGTAACGGTAGTGCTTGGCAAAGCATTAAGAAACCGCGTGTTAGAAAATCTCCGATTCGTCGAGGAGAAATACAAGAATGTGAAGAGTCAAGCTGTTACAACAATTCCTTGCATTGCAAGAAATTTTTAGTTGTTGACGATACAAAAATTTTGCGTATGTTAGCTACAAATTTATTGGTTTCGCTCGGTGCAACTGTCGAGCAATGTGAGAATGGAGAAGAGGCTGTGAGGCTAGTCGATGAAGGTCTAAAAAGGGATTATCCTAATCTTCCTTATGATTACATCTTAATGGACTGTCAGATGCCGGTGATGAATGGATTCGAGGCAACAAGGCAGATACGAGAGATGGAGAAGTTGTTTGGTGTTCACATTCCTATCATTGCGTTAACCGCAGATGTTGATAGTTCGACGGCAGTGACTGGAATGGACTTTCATATAGAGAAGCCTCTTAGAAAAGAACATGTACTTGAAGCTGTTAGATACTTCAACAGTAAAGAGGGACATGATATGTACAAGAAACAAAGTAATATGTATGCAAATTCATTCAGAAATGAGTAA 3231 0.3785 MALQSLSLVILLAYGALITLVSLTPCWYVMVTHIEKRVNLNSKNIVAQLQSETQHSAELLHPMKSSSTNLARLLSSSLDSTYISFSDIETKIAPLLFQAFEMVPHLSQISYIGMEGLFFSYCSDRDQALAMFSNSSSNNPLYYIQHVNNETGEVFGEAVISNSSINTSWIKEASNLSTEFASLGTKWSNGHDLLFLNSARINRIGVMSLGFTAKSITDYVTSVDRLGTSSYLATKDGQILVEGIQHIRFVVFNDSVSFQSVNANGDVIKNEGTVSCKNEAITSNLNIQDNKYLIHCYLIDIMGIESVYILAVPRNGFDVSYKKMGLALLNVMMVMILVAVFSFLFIDGRAIRREMHLCASLINQKEATQQAEKKNMNKSLAVASASHDVRTSLAGITALIKISSNLVPSGSELASNLIQMEDCTQDLLGLLNSILDTSKIEVGKMELKEEEFDLSHFLEEVVDIYYLVAMEKGVELVLDPCNGSIIKYSHVKGDRGRLKQVLCNLLNNAVKFTNEGHITVRAWAQKPTLSSSIIKTNQHSFMKHLSHLFSKKKNEADEEDIEKTMNSIQQHPPRYMDFVFEVDDTGKGIPKENYKSVFENYVQVKETDPVQEGTGLGLGIVQSLVRLMNGDIEIVDKNIGKKGTCFRFNVQLSLCEGETVTDFSARGGLEYGTSSRNQAQGRTIHATISNSNICSMSPMLHICNSSPRLEASRVVLFIGNKERRKICKRFMKSLGIKVKVVNCQEGLFDTLEEIKQKGRRSGGPSSPESSSNLSLSDSTSHNSFSRTRGVPLSSMGGNEYTSPVFKKTNVGTVPGFVLIVIDANEGPSFPKLFGIVSNFKKGFSSHCNIVWLDNPHFHRIDSKIIDQNDIVILKPFHGSRLFQVIMLLPEYSNGSAWQSIKKPRVRKSPIRRGEIQECEESSCYNNSLHCKKFLVVDDTKILRMLATNLLVSLGATVEQCENGEEAVRLVDEGLKRDYPNLPYDYILMDCQMPVMNGFEATRQIREMEKLFGVHIPIIALTADVDSSTAVTGMDFHIEKPLRKEHVLEAVRYFNSKEGHDMYKKQSNMYANSFRNE 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04791 1076 Pfam Response regulator receiver domain 934 1049 IPR001789 GO:0000160
Trre1g04791 1076 Gene3D - 913 1061 - -
Trre1g04791 1076 Gene3D - 442 657 IPR036890 -
Trre1g04791 1076 PRINTS Bacterial sensor protein C-terminal signature 612 630 IPR004358 GO:0016310|GO:0016772
Trre1g04791 1076 PRINTS Bacterial sensor protein C-terminal signature 578 592 IPR004358 GO:0016310|GO:0016772
Trre1g04791 1076 PRINTS Bacterial sensor protein C-terminal signature 596 606 IPR004358 GO:0016310|GO:0016772
Trre1g04791 1076 CDD REC_hyHK_CKI1_RcsC-like 933 1050 - -
Trre1g04791 1076 PANTHER TWO-COMPONENT HISTIDINE KINASE 65 1050 - -
Trre1g04791 1076 Gene3D - 348 441 - -
Trre1g04791 1076 SUPERFAMILY CheY-like 932 1054 IPR011006 -
Trre1g04791 1076 CDD HisKA 375 439 IPR003661 GO:0000155|GO:0007165
Trre1g04791 1076 ProSiteProfiles Response regulatory domain profile. 932 1054 IPR001789 GO:0000160
Trre1g04791 1076 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 432 649 IPR036890 -
Trre1g04791 1076 MobiDBLite consensus disorder prediction 762 795 - -
Trre1g04791 1076 ProSiteProfiles Histidine kinase domain profile. 384 654 IPR005467 -
Trre1g04791 1076 SMART HisKA_10 377 443 IPR003661 GO:0000155|GO:0007165
Trre1g04791 1076 MobiDBLite consensus disorder prediction 755 795 - -
Trre1g04791 1076 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 365 445 IPR036097 GO:0000155|GO:0007165
Trre1g04791 1076 SMART REC_2 931 1050 IPR001789 GO:0000160
Trre1g04791 1076 SMART HKATPase_4 493 654 IPR003594 -
Trre1g04791 1076 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 652 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04791 Trre-Chr1 53835495 53839981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04791 11 1056 Histidine Kinase Gene Family AT2G47430 37.873 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g04791 HATPase_c 1.3e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04791 - - cam:101504256 1590.86