Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04778 ATGACAGATTTTCAACCTCTACAGCAGAAGCCTGAATCTGCTGATACCACCCATGCTGAGTTTGACCATGGATTGGAGGACTTTATGCGCGGTCATTTGGATGATTGTATGTCATTTGCTTCGTGTAGTTCTTCCCGGGCACAGGATGATGAGGATGATGAGAGTGATCAGCTAGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCCGAGTCATCAGCAGCGCGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCAGACAGGCGCAGGAGATGATAACTACTATTGAAAGGAGGAATCGGGAGTCAGAGTTGATGGCTCTTGCAGGGTTACATACGGTGTCCATGTTGGACTCCTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGCCAGGAGGGGGCAGTGGAGAGGCCGAGCACTCAGGCATCTTCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTGTTGAATCGGGCACGAGAAAGGATGAGGGAAAGGTTGAGGCGGCAGAGGAGTTCTTCTGATGCTAATACCAATGTGTCGAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATAGTACCTGGTCACATGATCAGATTGGATCACGTAATGCACATGTGAATAATAATAATGGATCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGCCAAAGAAATAACAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAACAAAGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGTAAGTGAATCTGCACAAGCTGATCGGACCCGTGATATGGCAGCTGACCATGATGAGCGTCAGCCGGAACATGTTCGGCGGGACATGTTGAGGTTGCGCGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAATTAAGACAACGACACACAGTCTCCGGTATAAGGGAGGGGTTTCGCTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAAGCACCAATCCTGATGCCACATCAAATAGTAGCATTGATGAAACAAGACAAGATGAGAGCCAATCAAACAATCTTATAGATGACCAACAAGAAAATTATGACCAAGAGCAGATTAGGATCCCGGAAGCTGATGCACGTCAGTTGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAAGAACAGATTGCCGCAAATGGGGAAGGAAACTGGCCGCAGAGAGTTAATGGTACATTCAATCAGCTCAGAGATGGAATGGAAGCCAGTGATTGGCCACAGGAAACTCCCAGAAATTCAGCTGGGGAAGATCCTAATCCACAGGAGGCTCAAAGAATTTGGCAGGACGATAACACAAGGGAAGCTGTTGGTAATTGGTCTGAAGGACCTTCTGCAGCTTCAAGGAATCGCCGTGGTGTTCCGTTTAGAAGATTCAATAGATTTCATCCTCCTGATGATGATAATGTGTACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTACGCAGTGGTTTCCGTGAAAGTCTGGATCAACTAATTCAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTTCAACTACTCCTGCCTCACCTGAACGAGACCCTGATCAGCAGGGTGCTGAACATAATGAGGGTCAGCGTGAAGCCATCAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTGCCCCCACCACAACCACTGTGGCACCAAGATTTGCACCAAACTGGATGGTCTCGTCATACCATGCACCGCTCTGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCATCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTAAACAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCTAACGAATTAATTCGTGGAGGAGGTAAGTGTCCGTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATATTGTAA 2565 0.4694 MTDFQPLQQKPESADTTHAEFDHGLEDFMRGHLDDCMSFASCSSSRAQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHLLNRARERMRERLRRQRSSSDANTNVSSTMSDSRGSENRGSLGDASESENDYSTWSHDQIGSRNAHVNNNNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSESAQADRTRDMAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLETIVRGQASTNPDATSNSSIDETRQDESQSNNLIDDQQENYDQEQIRIPEADARQLPNQTGTLESSTSETISWQEASNQGGDWQEQIAANGEGNWPQRVNGTFNQLRDGMEASDWPQETPRNSAGEDPNPQEAQRIWQDDNTREAVGNWSEGPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPSTTPASPERDPDQQGAEHNEGQREAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSSGENGLGAETSDDGSKWGHVNKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04778 854 MobiDBLite consensus disorder prediction 53 79 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 316 338 - -
Trre1g04778 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 435 471 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 299 315 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 435 512 - -
Trre1g04778 854 Coils Coil 466 486 - -
Trre1g04778 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 852 IPR013083 -
Trre1g04778 854 MobiDBLite consensus disorder prediction 126 148 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 172 247 - -
Trre1g04778 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 111 854 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 544 564 - -
Trre1g04778 854 SUPERFAMILY RING/U-box 801 847 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 181 240 - -
Trre1g04778 854 Coils Coil 731 751 - -
Trre1g04778 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Trre1g04778 854 CDD mRING-HC-C3HC5_NEU1 799 851 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 487 512 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 42 79 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 299 338 - -
Trre1g04778 854 MobiDBLite consensus disorder prediction 655 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04778 Trre-Chr1 53722291 53727785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04778 784 848 C3H Transcription Factor Family AT3G06140 37.879 1.15e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04778 - - gmx:100784174 1396.33