Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04774 ATGCCTAGACGAAAGGTAAAACTTGCTTTTATCTCTGAAGAGTTGGCAAGGAAGGTAACCTACAACAAAAGAAAGAAGGGTCTCATTAAGAAGGTGGCAGAACTCACTACTCTTTGTGATGTTCCTGCTTGTGCCATAATTTCCAGTCCTTTTGATTCTGAAACAGAGGTCTGGCCAAATCGAGAGGGAGCCACGAAGGTGATTGACAGGTATCATAATTCATATATGTTAGACGAAAAAAGGAATGTGAATCAAGAGAGATTTATCATGCAGATGATTACCAAAGGAAGGGACCAGGCAAGAAAGATGAAACACGACAATCGTGAGAAGGAGCTTAATCTTCTCATGTTCCTTTGCTTGGAACACAATAATATCTCTATTGACCTGAATGCTGAAGAACTGAAAGATTTTGATAAGCTTGTTGAGAAGAAGTTGAAGGAGGTTGGTAGTAAGATTGAGACACTTGATTGA 471 0.3949 MPRRKVKLAFISEELARKVTYNKRKKGLIKKVAELTTLCDVPACAIISSPFDSETEVWPNREGATKVIDRYHNSYMLDEKRNVNQERFIMQMITKGRDQARKMKHDNREKELNLLMFLCLEHNNISIDLNAEELKDFDKLVEKKLKEVGSKIETLD 156
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04774 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g04774 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre1g04774 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g04774 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre1g04774 156 PANTHER MADS BOX PROTEIN 3 152 - -
Trre1g04774 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre1g04774 156 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Trre1g04774 156 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Trre1g04774 156 CDD MADS_SRF_like 3 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre1g04774 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g04774 Trre-Chr1 53642085 53642555 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04774 3 155 Type I MADS-box Gene Family AT1G65300 40.260 8.07e-36 123
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g04774 SRF-TF 1.6e-14 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04774 - - tpra:123888139 189.119