Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04771 ATGACTAGAAGGAAAGTGAAAATTGCTTTTATCTCTGATGATTCAACAAGGAGGGCAACCTACAACAGAAGAAAAAAATGTATCATTAAGAAGGTGGCTGAACTCACAACTCTGTGTGATATTTCTGCTTGTGTTATAATTTCCAATCCTTTTAATTCTGAAACAGAGTTCTGGCCAAATCGAGAGGGAGCTAAGGAGGTGATTGAGAGATATCAAAATTCATCTGTGAAAGATGCAACAAAGAATGTTAACCAACAGAGTTTGATTTTGCAAATGATTACTAAAGGTCAAGAGAAGCTAAGGAAATTGGAACAAAGCAATCATGAGAAGGAGCTGACTCTGCGTATGTTTGAGTATATGCAGCACAAAAATCTGCCAGACAATCTGACTGTCGAAGAACTGAAAGATTTTGATAAGCTCATTCAGAAGAATATGAAAGATTTTGATGATGCTAAGATCAATAAACTTAATTGA 474 0.3544 MTRRKVKIAFISDDSTRRATYNRRKKCIIKKVAELTTLCDISACVIISNPFNSETEFWPNREGAKEVIERYQNSSVKDATKNVNQQSLILQMITKGQEKLRKLEQSNHEKELTLRMFEYMQHKNLPDNLTVEELKDFDKLIQKNMKDFDDAKINKLN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04771 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g04771 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre1g04771 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre1g04771 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre1g04771 157 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Trre1g04771 157 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre1g04771 157 PANTHER MADS BOX PROTEIN 3 139 - -
Trre1g04771 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre1g04771 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g04771 157 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04771 Trre-Chr1 53586258 53586731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04771 3 143 Type I MADS-box Gene Family AT1G65300 38.028 2.89e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g04771 SRF-TF 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04771 - - gmx:100792290 178.718