Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04762 ATGAACTACTTGATTGATGTTGTGGGAAAGGGTTGGACGCGAAAGGACACTGCTGCTATACTTTACTCTTCAGGGACTACAGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTTTGTTGGTCTGCCGATGTATCTGCAGCTCAAAACGATGTTTTCCTAGCCTTCATTCCAATGTTTCATATCTATGGACTGATGTTCTTTGGATTAGGGTTGTTGTGTGTTGGTGTTACGACAGTTTTGATGCAGAAATACGATTTCCAATCTATGCTTGTCGCTATCGAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATTCGTTGGTGAAACATGCAAGCGAAAATCGGTGTGACTTATCTAGCCTAAGAAGAGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTTGGTTGAACTAAGGTCGGGTTATGGACTAACAGAAAGTTGTGGGGAAGCAACATTTTTCGGGTCGGATAAAGATGCTAAAGCTCATCCAGAAGCATGTGGAAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGATATTGACACAGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGCTATGGCTGAAAAGTGCTACTATTATGAAAGAATATCTAGGAAATGTGGAGGCAACAACTGCAACAATTGATTCAGATGTTGAACGAATAAAGGATCTAATCAAGCACAAAGGTTATCAGGTAGCTCTTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCTCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGGCAGGTACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAAGTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGCTAG 942 0.4214 MNYLIDVVGKGWTRKDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSAAQNDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQSMLVAIEKHKVNNIPAVPPVIHSLVKHASENRCDLSSLRRVGSGAAPLSKEMSQEFRKMFPLVELRSGYGLTESCGEATFFGSDKDAKAHPEACGKLIPTFCAKVIDIDTGKPLPPHKEGELWLKSATIMKEYLGNVEATTATIDSDVERIKDLIKHKGYQVALAELESVLLSHPLIVDAAVIPVEDEETGQVPMAYVVRAAGSEVSEDQVIQFVAG 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04762 313 ProSitePatterns Putative AMP-binding domain signature. 20 31 IPR020845 -
Trre1g04762 313 Gene3D - 13 36 - -
Trre1g04762 313 Gene3D - 37 181 - -
Trre1g04762 313 Pfam AMP-binding enzyme C-terminal domain 262 312 IPR025110 -
Trre1g04762 313 Gene3D - 247 313 IPR045851 -
Trre1g04762 313 SUPERFAMILY Acetyl-CoA synthetase-like 13 312 - -
Trre1g04762 313 Gene3D Luciferase; Domain 3 182 243 - -
Trre1g04762 313 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 312 - -
Trre1g04762 313 Pfam AMP-binding enzyme 13 242 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04762 Trre-Chr1 53509413 53510875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04762 14 312 Monolignol Biosynthesis Gene Families AT4G05160 42.138 2.16e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04762 K10526 - gmx:100796728 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04762 1 53509413 53510875 Trre1g04762 1 53509413 53510875 ECH