Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04758 ATGTCAGGAGAGGAAATTTGGCCACCCATAGAAGAAGAATCTAACACTTCTATGCCTCCATTTGATAATAGTAGTGGCTACAATTCAAGAACAGGAATTTATCACTCTCTTGTTAAGCTTGAAACCAAACATGAAATACCAACAAAGCCAGATCTTAACACTGCAAGTCTTGTGCTATCACAGTTCCCAACAGGAGAACTTGCTGATGCAAGAATTGCATACATTGATTTAAGTACTAATCACAGTGTAACTTACGGCGAGATTCACCGATCAGTTTACTCTCTTGCAACAGCTTTGTTTCATGGACTTGAGATTAGAAAAGGCGACGTGGTATTTTTGTTGTCTCCAAACTCGGTTTTGTACTCAACCATATGCTTAGCTGTGTTATCAGTTGGTGCAATTCTTACCACTGCCAACCCTCTCAATACTAAGTCGGAAATCGCGAAACAAGTACAAGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGTTACACAAATTGGTTCCAACTGGAGTTCCTACGATTCTCACCTCCAGTTCATCCGATGGAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTACGATTCACAAGAGTTACCGCATGTTCCTGTGGAACAATCAGACACTGCTGCTATACTTTACTCTTCAGGTACTACAGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTTTGCTGGTCTGCCGATGTATCTGCAGCTCAAAACGATATTTTCCTAGCCTTCATTCCAATGTTTCATATCTATGGACTGATGTTCTTTGGATTAGGGCTGTTGTGTGTTGGTGTTACGACAGTTTTGATGCAGAAATACGATTTCCAATCTATGCTTGTCGCTATCGAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATTCGTTGGTGAAACATGCAAGCGAAAATCAGTGTGACTTGTCTAGCCTAAGAAGAGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTCGGTTGAACTAAGGTCGGGTTATGGACTAACAGAAAGTTGTGGGGGAGCAACATTTTTCGGTTCAGATAAAGATGCTAAAGCTCATCCAGAAGCATGTGGAAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGATATTGAAACAGGGAAGCCTTTGCCACCTCACAAGGAAGGAGAGCTATGGCTGAAAAGTGCTACTATTATGAAAGAATATCTAGGAAATGTGGAGGCAACAACTGCAACAATTGATTCAGATGGTTGGTTGAAGACAGGAGATCTTTGTTATATTGATGAGAATGGAATTGTTTACATAGTTGAACGAATAAAGGAACTAATCAAGCACAAAGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCTCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGGCAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACCAGGTCATTAAATTTGTTGCAGGCCAGGTGGCTCCTTATAAAAAAGTGAGAAGGGTGAGTTTCATTGACAGTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTGCTCGAAGCAAATATCAACTTGTCTCGAAGTTATGA 1713 0.4127 MSGEEIWPPIEEESNTSMPPFDNSSGYNSRTGIYHSLVKLETKHEIPTKPDLNTASLVLSQFPTGELADARIAYIDLSTNHSVTYGEIHRSVYSLATALFHGLEIRKGDVVFLLSPNSVLYSTICLAVLSVGAILTTANPLNTKSEIAKQVQDSGAKLAISAPEELHKLVPTGVPTILTSSSSDGKFLSVEELIEGCYDSQELPHVPVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSAAQNDIFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQSMLVAIEKHKVNNIPAVPPVIHSLVKHASENQCDLSSLRRVGSGAAPLSKEMSQEFRKMFPSVELRSGYGLTESCGGATFFGSDKDAKAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSATIMKEYLGNVEATTATIDSDGWLKTGDLCYIDENGIVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIKFVAGQVAPYKKVRRVSFIDSIPRSAAGKILRKDLVARSKYQLVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04758 570 CDD 4CL 46 558 - -
Trre1g04758 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Trre1g04758 570 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g04758 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Trre1g04758 570 Gene3D - 42 463 IPR042099 -
Trre1g04758 570 Gene3D - 464 566 IPR045851 -
Trre1g04758 570 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Trre1g04758 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 559 - -
Trre1g04758 570 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 463 - -
Trre1g04758 570 SUPERFAMILY Acetyl-CoA synthetase-like 69 561 - -
Trre1g04758 570 Pfam AMP-binding enzyme 71 467 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04758 Trre-Chr1 53459619 53461914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04758 22 566 Monolignol Biosynthesis Gene Families AT1G20500 42.058 4.69e-150 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04758 K10526 - gmx:100783104 920.613