Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04753 ATGGCTATCTACCAAGGTCCTGGATTCCGATTCCACCCTACCGACGAAGAAATCGTTTGTTTCTACTTGAAACGTAAACTCACCGGAAATTTACCTTCTTGCTTCGATCATCTCGCTGTTATCGATATCTACAAGTTTGAGCCGTGGGATCTTCCAAGTTTGTCGAAGTTGAAAACTAGGGATTTGGAATGGTACTTTTTTACTGGGTTGGATAAGAAGTATGGTAATAGTATCAGGACGAATCGTGCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGTTATCAAGAACGGGGATGTTACTGTTGGAATGAAGAAGACTCTTGTTTATCACTTGGGTAGAGCTCCACATGGTGACAGGTCCAATTGGGTTATGCATGAATATAGGATGATTGATGAATCATTGGCCAAAGCTGGAGTGCAGAAGGATGCATATGTTCTGTGTAGGATATTTGAGAAGAGTGGTTCGGGGCCGAAGAATGGGGAGAAATATGGGGCACCATTTGTTGAAGCGGAATGGGAGAATGTTGTTGAAGGACAGGCGCTTCCGTTGCCGCCTGTTAATAATGATGTTTTGAAACAAGAAGTGTCTGCTCATGCTCCTGATGTCAATGAATGGGTGAATTCCTTGGTGGCTGTTGATAACGAGCCTTTCAAACAAATGCCTGCTCCTGTTGATGATGATTATGTTGAAACCCTTGACCTTGATCAGGAACTTGATACTAGTGTCACAGTTGGAAGCGCTGATCTTCCATTGAACTACTGTTATGGGGAGTCTAGTAGCCATCCTCAGTATTCCCAAGCATTTATTAATGATCGTAAGCAATTGGAAGCTGCTGTTGGTATTTATGATAATCAGGTTGATCAGCCTGATAATATGGCTGATCTATATGGTGTGGATATCAATTCAGTGCAAGATGGATACAATGGTGAGACAAACCATGATGAGAATACTCTGAATTTCAATTTTGCATCCGAGGATCCAGATCTATATTTTGATGCCTCTGCTTATCTCACCGGTTTGGGTGAAGAATACCTTGAAACCAATGATTTTAAGAATCTTGACGAGGCTGTTCCCTCCGAGTTTGATCCTTCTGTTGCAGCAATGGTAGAGGAGTACCTTGCATGCCCTGATGAAGATATTTCCAATTATATATGCTTCGATTCTCCTGTGAATGCAGAGAGTGAAAGCCCCATTGCCAACTATGGACAACCTCTCATCGATCAGAATCTGGAGGGTGAAATCAATGGTAGTTCCTTGGCTAACAAACATGTTTTTGAAGCACAGTCTAGTAATGAAGTTTTACCAAAGGACAATCTAGAGGCATCAAATTGGGTCTCAGATATGGCAGCAGATGATGCAAATTATTTTGTGAAGCAAGCCAATAAATTTTTGGCCCACATACCAGCTCCACCTGCATTTGCTTCAGAGTTTCCTGCTAAGAAGTTTGCTCTTGGGATGCATGCTGGAGCAGAGTCTTCCAGTTCAGCTCATATAGCTGCAGGTATGATCAGCATAACAGACATAACTTTTAGAGGCAACACGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAGCACCGTAATGTCTACTGGGTTTTCCCAAACTGGTGTTAACTCTCCTACTATGGTGCCTCTTTCTGGCTTGATCTGTAGCAAAACTGCACTTATGTTATCACATGGTTGGGTTTTCTTGACGGGTTTCTCAGTTGTGATTCTTTCTCTGAGTTTCAAGATTGGATGCTTCATGTATACGGGTAAATGA 1776 0.424 MAIYQGPGFRFHPTDEEIVCFYLKRKLTGNLPSCFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTGLDKKYGNSIRTNRATDRGYWKTTGKDRVIKNGDVTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDESLAKAGVQKDAYVLCRIFEKSGSGPKNGEKYGAPFVEAEWENVVEGQALPLPPVNNDVLKQEVSAHAPDVNEWVNSLVAVDNEPFKQMPAPVDDDYVETLDLDQELDTSVTVGSADLPLNYCYGESSSHPQYSQAFINDRKQLEAAVGIYDNQVDQPDNMADLYGVDINSVQDGYNGETNHDENTLNFNFASEDPDLYFDASAYLTGLGEEYLETNDFKNLDEAVPSEFDPSVAAMVEEYLACPDEDISNYICFDSPVNAESESPIANYGQPLIDQNLEGEINGSSLANKHVFEAQSSNEVLPKDNLEASNWVSDMAADDANYFVKQANKFLAHIPAPPAFASEFPAKKFALGMHAGAESSSSAHIAAGMISITDITFRGNTMDWMVGKNGGFSTVMSTGFSQTGVNSPTMVPLSGLICSKTALMLSHGWVFLTGFSVVILSLSFKIGCFMYTGK 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04753 591 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trre1g04753 591 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Trre1g04753 591 ProSiteProfiles NAC domain profile. 5 156 IPR003441 GO:0003677|GO:0006355
Trre1g04753 591 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Trre1g04753 591 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04753 Trre-Chr1 53446706 53449326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04753 6 583 NAC Transcription Factor Family AT5G04410 37.438 1.24e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g04753 NAM 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04753 - - mtr:25484826 833.558