Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04752 ATGGGTCGCGAACCTCTCTTACTTCCACCCCCAACCACATCCATACCCCCATCTACCACCACTGTCAGTAACCTTCCACTCGCTGTTTCTGCACCATCTGCTTCTGCTACTGCTGCTCCACCTACCTCTCTTGCTCCTGGCTTTAGGTTTCACCCAACTGATGAAGAACTCGTTATTTATTACCTCAAGCGCAAGGTTTCTGGAAAACCCTTTCGATTTGATGCTATTGCTGAAGTTGACATCTACAAGAGCGAACCCTGGGACCTTTCAGATAAGTCAAGGTTGAAGACCAGGGACCAAGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGTGGCAGAATGAACAGGGCTACTCTTAAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCCGTTAAGCATGATTTAAGGACTGTAGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGTAAGAGAACTAACTGGGTTATGCACGAGTACAGGCTTGTTGAAGAAGAGATGGAGAGGGTTGGGAATGGATCCTCTCAGCCACAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATTGGACCTCCAAATGGACAACGATATGCACCTTTTGTTGAAGAAGAGTGGGAAGATGGTTCGGGAATGGTTCCTGGAGCAGAACTCGTGTGTAATGGTCCTCTTGACCGCCCTCTGCGTATTGAATACAACAACGGCGGTCCTTCATGCAGTGAAGGAAGAAAAAATGTTGCGCAGGACACTCAATCCAACAATAAAACTCCACTTGATGTGAACAAGCTACCGATTGAGACCCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCATGACTGAGTTTTCATCACCAGAAAAGGATGATTCTAAGCGTATGCATGTGGATGACGAGTACCCATCACCCCAAACTGATAACCCAAAGCCCTTACCCTTACCTCAAATATACAAAAGGCGGCGGTATAACATGAACTCCAATCACTCTAATGTTTCTGGAGATTCATTCCCTAACAGTCAGGATCCATGCTCATCTACAATAACCACTGCCGCGACAACAGTCCAAGCAACTGCTGCCCCTGCCAAAACTACCAACCCTGCACCGAAGAAACATTTTCTGTCTGCACTGGTGGAGTTTTCTCTGCTTGAATCACTTGAATCGAAGAAGGAAAACCAGGCCTCGGTTCAGCAGGAAGATTTTGACTTGGGGAATCTTGAATCAACTGTGCCTCCGAGTGTTGCAAAGTACATCAAACACTTGCAGAGTGAAACTAAGAGGATCAGTGTTGAAAAGGAGACAATGCGGTTCGAGTTAACAAGTGCTCAAGCCATGATTAACATCCTCCAGTCTCGTGTCGAAACTCTGAGTAAAGAGAACGGAGAAATGAAGAAGATGATGATGAGAAATCCTTAG 1443 0.4553 MGREPLLLPPPTTSIPPSTTTVSNLPLAVSAPSASATAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLKGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERVGNGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEDGSGMVPGAELVCNGPLDRPLRIEYNNGGPSCSEGRKNVAQDTQSNNKTPLDVNKLPIETQNLLAVCKRESMTEFSSPEKDDSKRMHVDDEYPSPQTDNPKPLPLPQIYKRRRYNMNSNHSNVSGDSFPNSQDPCSSTITTAATTVQATAAPAKTTNPAPKKHFLSALVEFSLLESLESKKENQASVQQEDFDLGNLESTVPPSVAKYIKHLQSETKRISVEKETMRFELTSAQAMINILQSRVETLSKENGEMKKMMMRNP 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04752 480 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 344 - -
Trre1g04752 480 MobiDBLite consensus disorder prediction 249 273 - -
Trre1g04752 480 Pfam No apical meristem (NAM) protein 46 171 IPR003441 GO:0003677|GO:0006355
Trre1g04752 480 SUPERFAMILY NAC domain 36 199 IPR036093 GO:0003677|GO:0006355
Trre1g04752 480 MobiDBLite consensus disorder prediction 288 324 - -
Trre1g04752 480 Coils Coil 448 475 - -
Trre1g04752 480 FunFam Nac domain-containing protein 86 53 201 - -
Trre1g04752 480 Gene3D NAC domain 53 201 IPR036093 GO:0003677|GO:0006355
Trre1g04752 480 MobiDBLite consensus disorder prediction 291 312 - -
Trre1g04752 480 MobiDBLite consensus disorder prediction 246 273 - -
Trre1g04752 480 ProSiteProfiles NAC domain profile. 44 198 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04752 Trre-Chr1 53436518 53442231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04752 1 474 NAC Transcription Factor Family AT3G10480 44.920 1.85e-120 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g04752 NAM 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04752 - - tpra:123908634 775.007