Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04746 ATGGAACCGGCCCATGAACCTCAACACCAGCAACAACTTTCTTTGGCCTCTAGGGAACACACCAACATCATCAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCTTTTTCCATCACTGCTAATTCTTCGACCGAAGGAGGAGCAGGAGGAGAAGGAGGAGGAACAAGAGAAGATTGCAACAATGGTAACGATGTCGTTATCAACAATAATAACAGCTCTCCAACAACTTCTTATGTCGCGGAAAAACAAGAGGACAATATTCTTGACGAAGAATATGATATGGCAAATTGTTTGATTTTATTGGCACAAGGACAATCGAAAGAGTCACCGAAAAACACCGATGAATATGACGGTGGAATGATGAACTATACGAAATATAGCAGTAGAAAATTCATGGAAGCTGCAACTTTGGATTCTGGTAGAGCAGGTTACTATGTTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCATTTCAAGCACTTGGTGGCCATAGAGCAAGTCATAAAAAACCAAAAGCATTGGCAATTGCTCAAGAGAGAAAACAACTTTTTGATGATGATCAAGATTTTCAATTCAAAACCAATCATAAAACAATTTCCCTTCAATTCAACAACAATGGTAAGGGAAATCTTTACGCCGGAAACAACAACAACAATAAGTCTAAGGTTCATGAGTGTTCAATTTGTGGTTCTGAATTCACATCTGGACAAGCACTTGGTGGGCATATGAGGAGACACCGCGCGCCGGTGGGGACCGCCGCTCCTGCTAACACCACACTCTCTTTGACACCAATGGCTTTGGAACATGATGAAGATCATCAACCTAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTAGATCTCAATCTTCCTGCACCTGAAGATGAACATAGAGAATCAAAGTTTGCCTTTGCTTCCAAGCAACAACAACAACAACATGGCCAAAAACAACAACAGCAGCAACAGCAACAACAACAACAACAACAACAACAACAAACAAGTCTTGTCTTCTCTTCGCCGGCTTTGGTGGATTGTCATTACTAA 1059 0.406 MEPAHEPQHQQQLSLASREHTNIIKGKRTKRVRPQSPIPFSITANSSTEGGAGGEGGGTREDCNNGNDVVINNNNSSPTTSYVAEKQEDNILDEEYDMANCLILLAQGQSKESPKNTDEYDGGMMNYTKYSSRKFMEAATLDSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQERKQLFDDDQDFQFKTNHKTISLQFNNNGKGNLYAGNNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTAAPANTTLSLTPMALEHDEDHQPRKKRNVLSLDLDLNLPAPEDEHRESKFAFASKQQQQQHGQKQQQQQQQQQQQQQQQQTSLVFSSPALVDCHY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04746 352 SUPERFAMILY beta-beta-alpha zinc fingers 150 251 IPR036236 -
Trre1g04746 352 PANTHER ZINC FINGER PROTEIN ZAT5 77 324 - -
Trre1g04746 352 Gene3D Classic Zinc Finger 131 207 - -
Trre1g04746 352 Gene3D Classic Zinc Finger 209 265 - -
Trre1g04746 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 251 IPR013087 -
Trre1g04746 352 MobiDBLite consensus disorder prediction 1 68 - -
Trre1g04746 352 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Trre1g04746 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Trre1g04746 352 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Trre1g04746 352 SMART c2h2final6 229 251 IPR013087 -
Trre1g04746 352 SMART c2h2final6 151 173 IPR013087 -
Trre1g04746 352 MobiDBLite consensus disorder prediction 309 342 - -
Trre1g04746 352 MobiDBLite consensus disorder prediction 36 52 - -
Trre1g04746 352 Pfam C2H2-type zinc finger 150 176 - -
Trre1g04746 352 Pfam C2H2-type zinc finger 228 254 - -
Trre1g04746 352 MobiDBLite consensus disorder prediction 300 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04746 Trre-Chr1 53384655 53385713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04746 16 352 C2H2 Transcription Factor Family AT5G04390 45.669 4.91e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g04746 zf-C2H2_6 8.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04746 - - psat:127097550 494.582