Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04735 ATGTTTTCTAGGTTGTTACGTCCTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAAGAAGAAACAAATCATCATCATAGTCACCTTGCTGATCCTTGTCTTGTTCTAACTTCTGATCCTAAACCTCGTCTTCGTTGGACTACTGATCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTAGCAAAGCAACCCCAAAAGCAATCATGAGGACCATGAACGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTCGGACGAGGGATGCAAAGATGCAATATCAGGTTCATATCTTCTTGAAAGCCCTAGTACTGAAAACTCATCTCCAAAGTTACCAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAGAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCATGCAAGATGTTGGCCGATCAGTTTATTGGTGATACACCTATCGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACCGAGCTTGGTGGAAACGGAATGCATGTTTCAGAAGTACCCTATATTCTCCAGCCCCAAGGTGCAAACTGTTCCGCTGAAAGTTGCCTAACATCACTTGAAAGTCTCAGAGGATTGACTCTAGAAGGATCACTTGGTGGTGGGACAAAGAGGATGCTGGGTTTGGACTCGATGGTAGCGCCTTTGATCTGGAGTGATACTAACATGAGAACTCAAGGCATTCATTTATCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG 891 0.4355 MFSRLLRPHDHEGSVVVVQEETNHHHSHLADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDSDEGCKDAISGSYLLESPSTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTPIDTDIQKFQELPSTELGGNGMHVSEVPYILQPQGANCSAESCLTSLESLRGLTLEGSLGGGTKRMLGLDSMVAPLIWSDTNMRTQGIHLSQVNPQGIARYGM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04735 296 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Trre1g04735 296 Gene3D - 40 98 - -
Trre1g04735 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 213 IPR044848 GO:0003700
Trre1g04735 296 MobiDBLite consensus disorder prediction 117 131 - -
Trre1g04735 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Trre1g04735 296 MobiDBLite consensus disorder prediction 117 137 - -
Trre1g04735 296 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Trre1g04735 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Trre1g04735 296 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Trre1g04735 296 FunFam Myb family transcription factor 40 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04735 Trre-Chr1 53290075 53293632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04735 30 240 G2-like Transcription Factor Family AT3G24120 48.085 2.18e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g04735 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04735 - - gmx:100779871 442.965