Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04727 ATGGGTGGTACTGATTTATTGAGTGAAAAAGCAGCTTTGATGAGAGAGTCTCTTCAAAAAAGCCAAACAATCACAGACAACGTTGTCACCATTCTTGGTTCCTTTGACCACCGTCTTTCTGCCCTTGAAACCGCCATGCGTCCAACTCAGATTAGGACTCATTCTATTAGAAAAGCTCATGAGAATATTGATAAGACTTTGAAGGCTGCAGAGATTATATTGTCTCACTTTGATCAGTATCGTCAGGCAGAGGCCAAAATACTCAAAGGGCCGCACGAAGACCTGGAAAACTATCTTGAAGCAATTGCTAAGTTGAGAAGCAACATTCAGTTTTTTGGCAGTAAGAGCAGTTTTAAGAATAGTGATGGTGTTGTCAGCCATGCCAGTAGTTTGCTAAATAAAGCTATTTCTAAGCTACAGGACGAGTTTAATCAGCTATTATTATCTTACAGCAAACCTGTGGAACCCGAGCGCCTCTTTGATTGCCTTCCAAACTCAATGCGACCTTCGTCAGGATCACCTGGTCATGAGGGTGATCATAATGGCAAGTCCAATCATCATTCTGACTCTCACAACAATAATGCTGATGCTGTTGTCTACACACCTCCCGCTCTTATACCACCAAGAATTTTGCCACTGCTACACGATTTAGCTCAGCAAATGATTGAAGCTGGTCACCGACCACAGTTACTCACAATGTACAGGGAAGCCCGTTCTAATGTATTGGAAGAAAGCCTCCAAAAACTTGGAGTTGAGAAACTCAACAAAGACGATGTTCAAAAACTGCAATGGGAGATTTTGGAGGCCAAAATCGGAAACTGGATTCATTTCATGCGAATAGCAGTGAAATTGTTGTTTGCTGGTGAGAGGAAAGTTTGTGATCAGATATTTGAAGGCTTTGATTCACTTGCTGAACAATGTTTTGCCGAGGTGACAACAAATAGTGTGTCTATGCTACTTAGCTTTGGAGAGGCAATAGCCAAAAGCAAGAGATCCCCAGAAAAATTATTTGTACTTTTGGACATGTACGAAATAATGCAAGAGCTGCATTCAGAGATTGAAACACTTTTTAAAGGCAAAGCTTGTGCTGCAATAAGAGACGCTGCAATGGCTTTGACAAAACGGCTTGCACAGACAGCGCAGGAGACATTTGGAGATTTTGAAGAAGCGGTTGAAAAAGACGCTACAAAGACTGCAGTAACAGATGGAACTGTTCATCCTTTGACTAGCTATGTTATTAACTATGTCAAGTTTTTGTTTGACTATCGGTCCACCTTGAAGCAACTTTTCCAAGAATTTGAAGGTGGAAATGATTCTTCCCAGCTAGCTACTGTAACAATGCGAATAATGCAAGCTTTACAAATCAATCTAGATGGAAAATCGAAGCAGTATAAAGACCCTGCACTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGGTCTGAAGCCAAGGATTTGCTCGGTGATGATTGGGTACAAAGACATAGAAGGATTGTGCAGCAGCACGCAAATCAATATAAACGAAATGCTTGGGCAAAGATTCTTCAGTGCTTATCTATTCAGGGACTTGCCTCATCAGGCGGTGGGAGTAGTAATGCAGGTGGTGATGGCGGAGCTGGAAGTAGTAGTGGCGCTTCAAGAGCACTTGTTAAAGAAAGGTTTAAGCAATTCAATGTCATGTTTGAGGAACTCCATCAGAAACAATCACAATGGACAGTTCCAGACAGTGAGTTGCGAGAGTCTCTTCGGCTTGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCATTCGTGAAACGTTTTGGGCCTCTAGTGGAGAGTGGAAAGAATCCGCAGAAATACATAAAATACACCGCAGAAGATCTAGATCGAATGTTGGGCGAATTTTTTGAAGGAAAAAACATGAATGAAACCAAGCGGTAA 1944 0.4167 MGGTDLLSEKAALMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDKTLKAAEIILSHFDQYRQAEAKILKGPHEDLENYLEAIAKLRSNIQFFGSKSSFKNSDGVVSHASSLLNKAISKLQDEFNQLLLSYSKPVEPERLFDCLPNSMRPSSGSPGHEGDHNGKSNHHSDSHNNNADAVVYTPPALIPPRILPLLHDLAQQMIEAGHRPQLLTMYREARSNVLEESLQKLGVEKLNKDDVQKLQWEILEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFDSLAEQCFAEVTTNSVSMLLSFGEAIAKSKRSPEKLFVLLDMYEIMQELHSEIETLFKGKACAAIRDAAMALTKRLAQTAQETFGDFEEAVEKDATKTAVTDGTVHPLTSYVINYVKFLFDYRSTLKQLFQEFEGGNDSSQLATVTMRIMQALQINLDGKSKQYKDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRNAWAKILQCLSIQGLASSGGGSSNAGGDGGAGSSSGASRALVKERFKQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGPLVESGKNPQKYIKYTAEDLDRMLGEFFEGKNMNETKR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04727 647 Gene3D Exocyst complex component Exo70 71 647 - -
Trre1g04727 647 PANTHER EXOCYST COMPLEX PROTEIN EXO70 54 639 IPR004140 GO:0000145|GO:0006887
Trre1g04727 647 MobiDBLite consensus disorder prediction 161 196 - -
Trre1g04727 647 Pfam Exo70 exocyst complex subunit 273 634 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g04727 647 SUPERFAMILY Cullin repeat-like 73 638 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04727 Trre-Chr1 53213702 53220385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04727 5 647 EXO70 exocyst subunit family AT5G03540 74.925 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04727 K07195 - gmx:100813987 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04727 1 53213702 53220385 Trre1g04727 1 53213702 53220385 ECH