Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04726 ATGGGAATAGCAATGGGTGGTACTGATTTATTGAGTGAAAAAGCAGCTTTGATGAGAGAGTCTCTTCAAAAAAGCCAAACAATCACAGACAACGTTGTCACCATTCTTGGTTCCTTTGACCACCGTCTTTCTGCCCTTGAAACCGCCATGCGTCCAACTCAGATTAGGACTCATTCTATTAGAAAAGCTCATGAGAATATTGATAAGACTTTGAAGGCTGCAGAGATTATATTGTCTCACTTTGATCAGTATCGTCAGGCAGAGGCCAAAATACTCAAAGGGCCGCACGAAGACCTGGAAAACTATCTTGAAGCAATTGCTAAGTTGAGAAGCAACATTCAGTTTTTTGGCAGTAAGAGCAGTTTTAAGAATAGTGATGGTGTTGTCAGCCATGCCAGTAGTTTGCTAAATAAAGCTATTTCTAAGCTACAGGACGAGTTTAATCAGCTATTATTATCTTACAGCAAACCTGTGGAACCCGAGCGCCTCTTTGATTGCCTTCCAAACTCAATGCGACCTTCGTCAGGATCACCTGGTCATGAGGGTGATCATAATGGCAAGTCCAATCATCATTCTGACTCTCACAACAATAATGCTGATGCTGTTGTCTACACACCTCCCGCTCTTATACCACCAAGAATTTTGCCACTGCTACACGATTTAGCTCAGCAAATGATTGAAGCTGGTCACCGACCACAGTTACTCACAATGTACAGGGAAGCCCGTTCTAATGTATTGGAAGAAAGCCTCCAAAAACTTGGAGTTGAGAAACTCAACAAAGACGATGTTCAAAAACTGCAATGGGAGATTTTGGAGGCCAAAATCGGAAACTGGATTCATTTCATGCGAATAGCAGTGAAATTGTTGTTTGCTGGTGAGAGGAAAGTTTGTGATCAGATATTTGAAGGCTTTGATTCACTTGCTGAACAATGTTTTGCCGAGGTGACAACAAATAGTGTGTCTATGCTACTTAGCTTTGGAGAGGCAATAGCCAAAAGCAAGAGATCCCCAGAAAAATTATTTGTACTTTTGGACATGTACGAAATAATGCAAGAGCTGCATTCAGAGATTGAAACACTTTTTAAAGGCAAAGCTTGTGCTGCAATAAGAGACGCTGCAATGGCTTTGACAAAACGGCTTGCACAGACAGCGCAGGAGACATTTGGAGATTTTGAAGAAGCGGTTGAAAAAGACGCTACAAAGACTGCAGTAACAGATGGAACTGTTCATCCTTTGACTAGCTATGTTATTAACTATGTCAAGTTTTTGTTTGACTATCGGTCCACCTTGAAGCAACTTTTCCAAGAATTTGAAGGTGGAAATGATTCTTCCCAGCTAGCTACTGTAACAATGCGAATAATGCAAGCTTTACAAATCAATCTAGATGGAAAATCGAAGCAGTATAAAGACCCTGCACTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGGTCTGAAGCCAAGGATTTGCTCGGTGATGATTGGGTACAAAGACATAGAAGGATTGTGCAGCAGCACGCAAATCAATATAAACGAAATGCTTGGGCAAAGATTCTTCAGTGCTTATCTATTCAGGGACTTGCCTCATCAGGCGGTGGGAGTAGTAATGCAGGTGGTGATGGCGGAGCTGGAAGTAGTAGTGGCGCTTCAAGAGCACTTGTTAAAGAAAGGTTTAAGCAATTCAATGTCATGTTTGAGGAACTCCATCAGAAACAATCACAATGGACAGTTCCAGACAGTGAGTTGCGAGAGTCTCTTCGGCTTGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCATTCGTGAAACGTTTTGGGCCTCTAGTGGAGAGTGGAAAGAATCCGCAGAAATACATAAAATACACCGCAGAAGATCTAGATCGAATGTTGGGCGAATTTTTTGAAGGAAAAAACATGAATGAAACCAAGCGGTAA 1956 0.4167 MGIAMGGTDLLSEKAALMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDKTLKAAEIILSHFDQYRQAEAKILKGPHEDLENYLEAIAKLRSNIQFFGSKSSFKNSDGVVSHASSLLNKAISKLQDEFNQLLLSYSKPVEPERLFDCLPNSMRPSSGSPGHEGDHNGKSNHHSDSHNNNADAVVYTPPALIPPRILPLLHDLAQQMIEAGHRPQLLTMYREARSNVLEESLQKLGVEKLNKDDVQKLQWEILEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFDSLAEQCFAEVTTNSVSMLLSFGEAIAKSKRSPEKLFVLLDMYEIMQELHSEIETLFKGKACAAIRDAAMALTKRLAQTAQETFGDFEEAVEKDATKTAVTDGTVHPLTSYVINYVKFLFDYRSTLKQLFQEFEGGNDSSQLATVTMRIMQALQINLDGKSKQYKDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRNAWAKILQCLSIQGLASSGGGSSNAGGDGGAGSSSGASRALVKERFKQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGPLVESGKNPQKYIKYTAEDLDRMLGEFFEGKNMNETKR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04726 651 Pfam Exo70 exocyst complex subunit 277 638 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g04726 651 Gene3D Exocyst complex component Exo70 75 651 - -
Trre1g04726 651 MobiDBLite consensus disorder prediction 165 200 - -
Trre1g04726 651 SUPERFAMILY Cullin repeat-like 77 642 IPR016159 -
Trre1g04726 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 643 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04726 Trre-Chr1 53213690 53220385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04726 9 651 EXO70 exocyst subunit family AT5G03540 74.925 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04726 K07195 - gmx:100813987 1130.55